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Publications

Aguilar-Bonavides C, Sanchez-Arias R, Lanzas C. Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via l 1 -minimization. In review.

Aguilar-Bonavides C, Cruz-Cano R, Lanzas C. Prediction and rule extraction of major histocompatibility complex class II epitopes by logic minimization. Proceedings of the 14th International Conference on Bioinformatics and Computational Biology BIOCOMP'14. 2014 Jul: 167-173.

Aguilar-Bonavides C, Cardenas Gerardo A, Nakayasu ES, Gazos-Lopes F, Almeida IC, Leung M-Y. Automatic Annotation of GPI Structures Using Grid Computing Technology. Proceedings of the 5th International Conference on Bioinformatics and Computational Biology - BICoB2013.

Bayer-Santos E, Aguilar-Bonavides C, Rodrigues SP, Cordero EM, Marques AF, Varela-Ramirez A, Choi H, Yoshida N, da Silveira JF, Almeida IC. Proteomic analysis of Trypanosoma cruzi secretome: characterization of two populations of extracellular vesicles and soluble proteins. J Proteome Res. 2012 Dec 8.  

Aguilar-Bonavides C, Leung, M-Y, Nakayasu, ES, Felipe Gazos-Lopes, Almeida, IC Computational Tool for Large-Scale GPIomic analysis. Proceedings of the ACM International Conference on Bioinformatics and Computational Biology. Oct 2012.

Rodrigues SP, Ventura JA, Aguilar C, Nakayasu ES, Choi H, Sobreira TJ, Nohara LL, Wermelinger LS, Almeida IC, Zingali RB, Fernandes PM. Label-free quantitative proteomics reveals differentially regulated proteins in the latex of sticky diseased Carica papaya L. plants. J Proteomics. 2012 Jun 18;75(11):3191-8. Epub 2012 Mar 24. PubMed PMID: 22465191.  

Bayona JC, Nakayasu ES, Laverrière M, Aguilar C, Sobreira TJ, Choi H, Nesvizhskii AI, Almeida IC, Cazzulo JJ, Alvarez VE. SUMOylation pathway in Trypanosoma cruzi: functional characterization and proteomic analysis of target proteins. Mol Cell Proteomics. 2011 Dec;10(12):M110.007369. Epub 2011 Aug 10. PubMed PMID: 21832256; PubMed Central PMCID: PMC3237068.

Rodrigues SP, Ventura JA, Aguilar C, Nakayasu ES, Almeida IC, Fernandes PM, Zingali RB. Proteomic analysis of papaya (Carica papaya L.) displaying typical sticky disease symptoms. Proteomics. 2011 Jul;11(13):2592-602. doi: 10.1002/pmic.201000757. Epub 2011 Jun 1. PubMed PMID: 21630455.  

Yichoy M, Nakayasu ES, Shpak M, Aguilar C, Aley SB, Almeida IC, Das S. Lipidomic analysis reveals that phosphatidylglycerol and phosphatidylethanolamine are newly generated phospholipids in an early-divergent protozoan, Giardia lamblia. Mol Biochem Parasitol. 2009 May;165(1):67-78. Epub 2009 Jan 22. PubMed PMID: 19393163; PubMed Central PMCID: PMC2737524.

Posters and Talks

BICoB 2013. International Conference on Bioinformatics and Computational Biology. Honolulu, Hawaii. March 4 – 6 2013.
Talk: Automatic annotation of GPI structures using grid computing.

Rio Grande Branch ASM Meeting. Albuquerque, NM. March 4-5, 2011.
Poster: Computational Tool for the Identification of GPI Structures Using Mass Spectrometry Data.

RECOMB-CP 2010. Research in Computational Molecular Biology - Computational Proteomics. San Diego, California. March 27-28, 2010.
Poster: Developing a Computational Tool for the Automated Large-Scale GPIomic Analysis.

ABRCMS - Annual Biomedical Research Conference for Minority Students.
Phoenix, Arizona. November 4 -7, 2009.
Talk: Computational Tool for Estimating the Association of RNA Secondary Structures with Inversion Concentration.

SACNAS National Conference – Salt Lake City, Utah. October 8 – 12, 2008.
Talk: Distribution of inverted repeats occurring among different types of Papillomavirus.

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