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NIMBioS Investigative Workshop

Olfactory Modeling

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Topic: Large-scale Modeling of Olfactory Processing

Meeting dates: March 2-4, 2015

Location: NIMBioS at the University of Tennessee, Knoxville

Sharon Crook, School of Mathematical and Statistical Sciences & School of Life Sciences, Arizona State Univ., Tempe
Brian Smith, School of Life Sciences, Arizona State Univ., Tempe

Objectives: The sense of smell is important for all animals; odors are associated with identifying and locating food, determining food quality, and identifying threats. In humans, loss of sense of smell occurs with normal aging and is associated with a loss in quality of life. A decline in the ability to detect and discriminate odors also can be a harbinger of neurodegenerative conditions such as Parkinson's disease and Alzheimer's disease. Moreover, the olfactory system is an important model system for exploring neural computation including changes in neural circuits in response to the environment and experience. The olfactory system provides specific and important advantages for understanding learning and memory, one of the most important goals in neuroscience. Recent technological advances have led to a wealth of information about how olfactory coding takes place in the mammalian nervous system, where experimental approaches range from large-scale measurement of neural activity during behavior to manipulation of activity via optogenetics. Integration of these data through comprehensive models of the neural networks involved in olfactory processing will provide a significant advance in our understanding of olfaction, including the relationship between neural activity and behavior. Our workshop goal was to review the current state of the mathematical approaches and tools for modeling olfaction. We also identified tasks for future development that will maximize the impact of individual projects, and defined areas of mutual interest and establish collaborations for large-scale modeling of this system, with a focus on incorporating realistic biophysical mechanisms for learning and memory.

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Evaluation Report

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Olfactory Modeling WordPress site.

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Playlist of online videos. Selected presentations were streamed live during the Workshop and were archived for online viewing.

photo. Summary Report. Participants presented short overviews of their own work and thoughts regarding: (1) experimentally observed properties that are important for large-scale modeling of the olfactory bulb, (2) the current state of modeling of this area and what is missing from these models, and (3) neuroinformatics resources that could be helpful moving forward, including databases and software tools. Group discussion over the course of the workshop gradually led to convergence to several important topics that are necessary for creating and understanding large-scale models of the olfactory system, including the characterization of odor space, learning and memory, and the role of feedback from piriform cortex on olfactory bulb dynamics. We also discussed ideas about a roadmap for moving forward with collaborative work in these areas, as well as the development of community based models.



Keller et al. 2017. Predicting human olfactory perception from chemical features of odor molecules. Science, 355(6327): 820. [Online]

Gerkin RC, Castro JB. 2015. The number of olfactory stimuli that humans can discriminate is still unknown. eLife, 4: e08127. [Online]


Gerkin RC, Keller A, Mainland J, Ihara Y, Vosshall L, Meyer P. 2016. From Shape to Smell: Predicting odor descriptors for single molecules. 152.02, Society for Neuroscience (SFN).


Gerkin RC. 2016. NeuronUnit: A package for data-driven validation of neuron and ion channel models using SciUnit.

NIMBioS Investigative Workshops focus on broad topics or a set of related topics, summarizing/synthesizing the state of the art and identifying future directions. Workshops have up to 35 participants. Organizers and key invited researchers make up half the participants; the remaining participants are filled through open application from the scientific community. Open applicants selected to attend are notified by NIMBioS within two weeks of the application deadline. Investigative Workshops have the potential for leading to one or more future Working Groups. Individuals with a strong interest in the topic, including post-docs and graduate students, are encouraged to apply. If needed, NIMBioS can provide support (travel, meals, lodging) for Workshop attendees, whether from a non-profit or for-profit organization.

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From 2008 until early 2021, NIMBioS was supported by the National Science Foundation through NSF Award #DBI-1300426, with additional support from The University of Tennessee, Knoxville. Any opinions, findings, and conclusions or recommendations expressed in this material are those of the author(s) and do not necessarily reflect the views of the National Science Foundation.
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