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Publications

   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Publications 2017 Online
Abdelrazec A, Gumel AB. 2017. Mathematical assessment of the role of temperature and rainfall on mosquito population dynamics. Journal of Mathematical Biology 74(6): 1351. Link
Baker CM, Armsworth PR, Lenhart SM. 2017. Handling overheads: Optimal multi-method invasive species control. Theoretical Ecology. doi:10.1007/s12080-017-0344-1 Link
Balduzzi et al. 2017. Reshaping plant biology: qualitative and quantitative plant morphology. Frontiers in Plant Science. Link
Baron et al. 2017. Synthesis Centers as Critical Research Infrastructure. Bioscience 67(8): 750. Link
Bintz J, Lenhart S, Lanzas C. 2017. Antimicrobial stewardship and environmental decontamination for the control of Clostridium difficile transmission in healthcare settings. Bulletin of Mathematical Biology 79(1): 36. Link
Bucini G, Beckage B, Gross LJ. 2017. Climate seasonality, fire and global patterns of tree cover. Frontiers of Biogeography. Link
Bush MB, Correa-Metrio A, van Woesik R, Shadik CR, McMichael CNH. 2017. Human disturbance amplifies Amazonian El Nino-Southern oscillation signal. Global Change Biology. Link
Caruso CM et al. 2017. What are the environmental determinants of phenotypic selection? A meta-analysis of experimental studies. The American Naturalist. 2017 Sep 1;190(3):000-000. Link
Cho E. Submitted 2017. A new formula for the volume of a simplex. International Electronic Journal of Pure and Applied Mathematics.
Coppinger et al. 2017. Studying audience effects in animals: what we can learn from human language research. Animal Behaviour 124: 161. Link
Delavaux CS, Smith-Ramesh LM, and Kuebbing SE. 2017. Beyond nutrients: A meta-analysis of the diverse effects of arbuscular mycorrhizal fungi on plants and soils. Ecology 8(98): 2111. Link
De Leo et al. 2017. A novel framework to account for ecological drivers in the control and elimination of environmentally transmitted disease: a modelling study. Lancet 389(5): 5. Link
Delmas et al. 2017. Analyzing ecological networks of species interactions. bioRxiv 112540. Link
De Silva KR, Tuoc VP, Lenhart S. 2017. Advection control in parabolic PDE systems for competitive populations. Discrete and Continuous Dynamical Systems-Series B 22(3): 1049. Link
De Silva KR, Eda S, Lenhart S. 2017. Modeling environmental transmission of map infection in dairy cows. Mathematical Biosciences and Engineering 14(4): 1001. Link
Earl JE, Zollner PA. 2017. Advancing research on animal-transported subsidies by integrating animal movement and ecosystem modelling. Journal of Animal Ecology 86(5): 987. Link
Earl JE et al. 2017. Quantitative tools for implementing the new significant portion of the range definition for the Endangered Species Act. Conservation Biology. Link
Eaton et al. In press (2017). "Rule of Five" framework for models and modeling to unify mathematicians and biologists and improve student learning. PRIMUS.
Erickson RA et al. 2017 Jun 7. Defining and classifying migratory habitats as sources and sinks: The migratory pathway approach. Journal of Applied Ecology. doi.10.1111/1365-2664.12952 Link
Falcon-Lezama et al. 2017. Analysis of spatial mobility in subjects from a Dengue endemic urban locality in Morelos State, Mexico. PLoS ONE 12(2): e0172313. Link
Flanagan SP, Jones AG. 2017 May 9. Constraints on the FST–heterozygosity outlier approach. Journal of Heredity. Link
Flanagan SP, Jones AG. 2017. Genome-wide selection components analysis in a fish with male pregnancy. Evolution. Link
Forbes et al. 2017. A framework for predicting impacts on ecosystem services from (sub) organismal responses to chemicals. Environmental Toxicology and Chemistry 36(4): 845. Link
Gavrilets S, Richerson PJ. 2017. Collective action and the evolution of social norm internalization. Proceedings of the National Academy of Sciences. Link
Garchitorena et al. 2017. Disease ecology, health and the environment: a framework to account for ecological and socio-economic drivers in the control of neglected tropical diseases. Philosophical Transactions Of The Royal Society B-Biological Sciences 1722(372). Link
Godsoe W, Franklin J, Blanchet FG. 2017. Effects of biotic interactions on modeled species' distribution can be masked by environmental gradients. Ecology and Evolution 7(2): 654. Link
Godsoe W, Jankowski J, Holt RD, Gravel D. 2017. Integrating Biogeography with Contemporary Niche Theory. Trends in Ecology and Evolution 7(32): 488. Link
Godsoe et al. 2017. Interspecific interactions and range limits: contrasts among interaction types. Theoretical Ecology. Link
Hamelin FM et al. 2017. The evolution of parasitic and mutualistic plant-virus symbioses through transmission-virulence trade-offs. Virus Research. doi:10/1016/j.virusres.2017.04.011 Link
Hampton SE et al. 2017. Best practices for virtual participation in meetings: Experiences from synthesis centers. The Bulletin of the Ecological Society. Link
Hilker FM et al. 2017. Modeling virus coinfection to inform management of maize lethal necrosis in Kenya. Phytopathology. Link
Holden et al. 2017. BUMPER v1.0: a Bayesian user-friendly model for palaeo-environmental reconstruction. Geoscientific Model Development 10(1): 483. Link
Holekamp KE, Benson-Amram S. 2017. The evolution of intelligence in mammalian carnivores. Interface Focus 7.3 20160108 Link
Holzman R, Hulsey CH. 2017. Mechanical Transgressive Segregation and the Rapid Origin of Trophic Novelty. Scientific Reports 7: 40306. Link
Hopkins JB III, Ferguson JM, Tyers DB, Kurle CM. 2017. Selecting the best stable isotope mixing model to estimate grizzly bear diets in the Greater Yellowstone Ecosystem. PLoS ONE 12(5): e0174903. doi:10.1371/journal.pone.0174903 Link
Kapur M, Franklin EC. 2017. Simulating future climate impacts on tropical fisheries: are contemporary spatial fishery management strategies sufficient? Canadian Journal of Fisheries and Aquatic Sciences. Link
Keller et al. 2017. Predicting human olfactory perception from chemical features of odor molecules. Science:355:6327:820-826. doi:10/1126/science.aal2014 Link
Kershenbaum et al. 2017. Measuring acoustic complexity in continuously varying signals: How complex is a wolf howl? Bioacoustics.
Lawing AM, Eronen JT, Blois JL, Graham CH, Polly PD. 2017. Community functional trait composition at the continental scale: the effects of non-ecological processes. Ecography 40(5): 651. Link
Lee et al. 2017. Model distinguishability and inference robustness in mechanisms of cholera transmission and loss of immunity. Journal of Theoretical Biology 420: 68. Link
Levy B, Collins C, Lenhart S, Stiver W. 2017. Evaluating wild hog preferences to guide control strategies in the Great Smoky Mountains National Park. Natural Resource Modeling 30(3): e12132. Link
Li M, Duncan K, Topp CN, Chitwood DH. 2017. Persistent homology and the branching topologies of plants. American Journal of Botany 104 (3): 349. Link
Li et al. 2017. Persistent homology: a tool to universally measure plant morphologies across organs and scales. bioRxiv. Link
Lowry et al. 2017. Breaking RAD: An evaluation of the utility of restriction site associated DNA sequencing for genome scans of adaptation. Molecular Ecology Resources 17(2): 142. Link
Lowry et al. 2017. Responsible RAD: Striving for best practices in population genomic studies of adaptation. Molecular Ecology Resources. Link
Luo et al. 2017. Transient dynamics of terrestrial carbon storage: mathematical foundation and its applications. Biogeosciences 14(1): 145. Link
Magombedze G, Shiri T, Eda S, Stabel JR. 2017. Inferring biomarkers for Mycobacterium avium subsp. paratuberculosis infection and disease progression in cattle using experimental data. Scientific Reports 7: 44765. Link
Massol et al. 2017. How life-history traits affect ecosystem properties: effects of dispersal in meta-ecosystems. Oikos 126(4): 532. Link
McAvoy TJ, Mays R, Johnson NG, Salom SM. 2017. The Effects of Shade, Fertilizer, and Pruning on Eastern Hemlock Trees and Hemlock Woolly Adelgid. Forests 5(8): 156. Link
Mohammed-Awel J, Zhao RJ, Numfor E, Lenhart S. 2017. Management strategies in a malaria model combining human and transmission-blocking vaccines. Discrete and Continuous Dynamical Systems-Series B 22(3): 977. Link
Mohammed-Awel J, Numfor E. 2017. Optimal insecticide-treated bed-net coverage and malaria treatment in a malaria-HIV co-infection model. Journal of Biological Dynamics 11(1): 160. Link
Moody KN et al. 2017. Contrasting post-settlement selection results in many-to-one mapping of high performance phenotypes in the Hawaiian waterfall-climbing goby Sicyopterus stimpsoni. Evolutionary Ecology. Link
Numfor E, Hilker FM, Lenhart S. 2017. Optimal culling and biocontrol in a predator-prey model. Bulletin of Mathematical Biology 79(1): 88. Link
Okuneye K, Gumel AB. 2017. Analysis of a temperature- and rainfall-dependent model for malaria transmission dynamics. Mathematical Biosciences 287: 72. Link
Pereira et al. Accepted (2017). Rio Report - A Roadmap for Leptospirosis Research and Health Policies based on Country Needs. Revista Panamericana de Salud Publica.
Perez-Escobar et al. 2017. Recent origin and rapid speciation of Neotropical orchids in the world's richest plant biodiversity hotspot. New Phytologist 2(215): 891. Link
Pullen RH, Abel S. 2017. Catch bonds at T cell interfaces: Impact of surface reorganization and membrane fluctuations. Biophysical Journal 113(1): 120-131. Link
Rejniak KA (ed). 2016. Systems Biology of Tumor Microenvironment: Quantitative Modeling and Simulations 1st Edition, Vol 936. Springer International Publishing. Link
Rusch H, Gavrilets S. 2017. The logic of animal intergroup conflict: A review. Journal of Economic Behavior and Organization. Link
Santiago E. Under review (2017). Simulation of a multihost-multistrain mathematical model for leptospirosis.
Schneider et al. 2017. The Use of Chemoprophylaxis after Floods to Reduce the Occurrence and Impact of Leptospirosis Outbreaks. International Journal of Environmental Research and Public Health 6(14): 594. Link
Sgouralis I, Nebenfuhr A, Maroulas V. 2017. A Bayesian Topological Framework for the Identification and Reconstruction of Subcellular Motion. SIAM Journal on Imaging Sciences 2(10): 871. Link
Sheldon et al. In press (2017). Revisiting the physics of spider ballooning. Association for Women in Mathematics Series.
Shih PM, Hemp J, Ward LM, Matzke NJ, Fischer WW. 2017. Crown group Oxyphotobacteria postdate the rise of oxygen. Geobiology 15(1): 19. Link
Siepielski AM et al. 2017. Precipitation drives global variation on natural selection. Science 355(6328): 959-62. Link
Smith-Ramesh LM. In press. Book Review: Leslie Anthony, The aliens among us: How invasive species are transforming the planet – and ourselves. Biological Invasions. Link
Smith-Ramesh LM. 2017. Invasive plant alters community and ecosystem dynamics by promoting native predators. Ecology. Link
Smith-Ramesh LM, Reynolds HL. 2017. The next frontier of plant–soil feedback research: unraveling context dependence across biotic and abiotic gradients. Journal of Vegetation Science. Link
Sturner K, Bishop P, Lenhart SM. 2016. Developing Collaboration Skills in Team Undergraduate Research Experiences. PRIMUS: Problems, Resources, and Issues in Mathematics Undergraduate Studies. Link
Thomas-Sharma S et al. July 2017. A risk assessment framework for seed degeneration: Informing an integrated seed health strategy for vegetatively propagated crops. Phytopathology Link
Volz LJ, Welborn BL, Goebel MS, Gazzaniga MS, Grafton ST. 2017. Egoistic Altruism: a modality dependent framework for moral decision making. PNAS. Submitted. Link
Vulinec et al. 2017. Buckyballs and bats: trace evidence points to trophic interactions. Frontiers in Ecology and the Environment 15: 108. Link
Waring TM, Goff SH, Smaldino PE. 2017. The coevolution of economic institutions and sustainable consumption via cultural group selection. Ecological Economics. Link
Wiederholt R, Mattsson BJ, Thogmartin WE, Runge MC, Diffendorfer JE, Erickson RA, Federico P, López-Hoffman L, Fryxell J, Norris DR, Sample C. 2017 Jun 1. Estimating the per‐capita contribution of habitats and pathways in a migratory network: a modelling approach. Ecography. Link
Whitehouse H et al. 2017. The evolution of extreme cooperation via shared dysphoric experiences. Scientific Reports 7: 44292. Link
Zhang GY, Basharat U, Matzke N, Franz NM. 2017. Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae). Molecular Phylogenetics and Evolution 109: 226. Link
Zhao et al. In press (2017). Flying Spiders: Simulating and modeling the dynamics of ballooning. Association for Women in Mathematics Series. 
Zefferman MR. 2017. Cultural multilevel selection suggests neither large or small cooperative agreements are likely to solve climate change without changing the game. Special Feature: Original Article Applying Cultural Evolution to Sustainability Challenges. Sustainability Science. doi.org/10.1007/s11625-017-0488-3 Link

   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Krivan et al. 2016. A dynamical model for bark beetle outbreaks. Journal of Theoretical Biology, 407: 25-37.
Publications 2016 Online
Abboud et al. 2016. Computational Analysis Supports an Early, Type 17 Cell-Associated Divergence of Blunt Trauma Survival and Mortality. Critical Care Medicine 44(11): e1074. Link
An G et al. 2016. Optimization and control of agent-based models in biology: A perspective. Bulletin of Mathematical Biology 79: 63. Link
Arriaga J, Sanchez H, Vallejo EE, Hedley R, Taylor CE. 2016. Identification of Cassin's Vireo (Vireo cassinii) individuals from their acoustic sequences using an ensemble of learners. Neurocomputing 175(Part B): 966-979. Link
Asih et al. 2016. The Dynamics of HPV infection and cervical cancer cells. Bulletin of Mathematical Biology 78(1): 4-20. Link
Atta-Boateng A. 2016. Morphological Plant Modeling: Unleashing geometric and topologic potential within the plant sciences.
Baez J, Harte J, Harper M. 2016. Special issue: Information and entropy in biological systems. Entropy. Link
Baez JC, Pollard BS. 2016. Relative entropy in biological systems. Entropy 18(2): 46. Link
Baggio JA, Hillis V. 2016. Success bias imitation increases the probability of effctively dealing with ecological disturbances. Proceedings of the 2016 Winter Simulation Conference. Link
Balduzzi et al. 2016. Reshaping plant biology: Qualitative and quantitative descriptors for plant morphology. Frontiers in Plant Sciences special issue on Plant Morphological Modeling.
Bapst DW, Wright AM, Matzke NJ, Lloyd GT. 2016. Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria). Biology Letters 12(7): 20160237. Link
Barocas A, Golden HN, Harrington M, McDonald DB, Ben-David M. 2016. Coastal latrine sites as social information hubs and drivers of river otter fission-fusion dynamics. Animal Behavior, 120: 103. Link
Bar-Ziv E, Ilany A, Demartsev V, Barocas A, Geffen E, Koren L. 2016. Individual, social, and sexual niche traits affect copulation success in a polygynandrous mating system. Behavioral Ecology and Sociobiology 70: 901. Link
Beaulieu JM, O'Meara BC. 2016. Detecting hidden diversification shifts in models of trait-dependent speciation and extinction. Systematic Biology 65(4): 583-601. Link
Bode M, Sanchirico JN, Armsworth PR. 2016. Returns from matching management resolution to ecological variation in a coral reef fishery. Proceedings of the Royal Society B: Biological Sciences 283(1826). Link
Breeschoten T, Doorenweerd C, Tarasov S, Vogler AP. 2016. Phylogenetics and biogeography of the dung beetle genus Onthophagus inferred from mitochondrial genomes. Molecular Phylogenetics and Evolution 105: 86. Link
Burghardt GM, Albright JD, Davis KM. 2016. Motivation, development and object play: Comparative perspectives with lessons from dogs. Behaviour 153(6-7): 727-747. Link
Chaudhary et al. 2016. MycoDB, a global database of plant response to mycorrhizal fungi. Scientific Data 3: 160028. Link
Chitwood DH, Bucksch A (eds.). 2016. Plant morphological modeling: Unleashing geometric and topologic potential within the plant sciences. Frontiers Research Topic. Link
Christley S, Neilan RM, Oremland M, Salinas R, Lenhart S. 2016. Optimal control of sugarscape agent-based model via a PDE approximation model. Optimal Control Applications and Methods. Link
Cordoni G, Palagi E. 2016. Aggression and hierarchical steepness inhibit social play in adult wolves. Behaviour 153(6-7): 727-747. Link
Cornetti L, Benazzo A, Hoban S, Vernesi C, Bertorelle G. 2016. Ancient, but not recent, population declines have had a genetic impact on alpine yellow-bellied toad populations, suggesting potential for complete recovery. Conservation Genetics 17(3): 727-743. Link
Dantzler et al. 2016. Canine distemper outbreak modeled in an animal shelter. Letters in Biomathematics 3(1): 13-28. Link
de Boer et al. 2016. Optimal allocation of leaf epidermal area for gas exchange. New Phytologist 210(4): 1219-1228. Link
Deng Q, Hui D, Wang J, Yu CL, Li C, Reddy KC, Dennis S. 2016. Assessing the impacts of tillage and fertilization management on nitrous oxide emissions in a cornfield using the DNDC model. Journal of Geographical Research: Biogeosciences. Link
Earl et al. 2016. Ranavirus could facilitate local extinction of rare amphibian species. Oecologia. 2016 Oct 1;182(2):611-23. Link
Earl et al. 2016. Effects of timber harvest on small mammal captures in experimental forestry plots. Animal Biology 66(3-4): 347. Link
Eaton et al. 2016. "Rule of Five" framework for models and modeling to unify mathematicians and biologists and improve student learning. PRIMUS.
Erickson RA, Thogmartin WE, Diffendorfer JE, Russell RE, Szymanski JA. 2016. Effects of wind energy generation and white-nose syndrome on the viability of the Indiana bat. PeerJ 4: e2830. Link
Falcon-Lezama JA, Martinez-Vega RA, Kuri-Morales PA, Ramos-Castañeda J, Adams B. 2016. Day-to-day population movement and the management of dengue epidemics. Bulletin of Mathematical Biology 78(10): 2011. Link
Farrior CE, Bohlman SA, Hubbell S, Pacala SW. 2016. Dominance of the suppressed: Power-law size structure in tropical forests. Science 351(6269): 155-157. Link
Ferguson JM, Hopkins JB, Witteveen BH. 2016. Integrating population abundance and diet data to improve inferences on food web dynamics. Proceedings of the Royal Society B.
Fernandez et al. 2016. A genomewide catalogue of single nucleotide polymorphisms in white-beaked and Atlantic white-sided dolphins. Molecular Ecology Resources 16(1): 266-276. Link
Flanagan SP, Rosenqvist G, Jones AG. 2016. Mate quality and the temporal dynamics of breeding in a sex-role-reversed pipefish, S. typhle. Behavioral Ecology and Sociobiology 71: 28. Link
Forbes VE, Galic N. 2016. Next generation ecological risk assessment: Predicting risk from molecular initiation to ecosystem service delivery. Environmental International 91: 215-219. Link
Forde JE, Ciupe SM, Cintron-Arias A, Lenhart S. 2016. Optimal control of drug therapy in a hepatitis b model. Applied Sciences 6(8): 219. Link
Fouts HN, Neitzel CL, Bader LR. 2016. Work-themed play among young children in foraging and farming communities in Central Africa. Behaviour 153(6-7): 663-691. Link
Friedman et al. 2016. MultiCellDS: A standard and a community for sharing multicellular data. bioRxiv 090696. Link
Gavrilets S, Auerbach J, van Vugt M. 2016. Convergence to consensus in heterogeneous groups and the emergence of informal leadership. Scientific Reports 6: 29704Q. Link
Gil et al. 2016. Spatial spread of dengue in a non-endemic tropical city in northern Argentina. Acta Tropica 158: 24-31. Link
Gould BA, Chen Y, Lowry DB. 2016. Pooled ecotype sequencing reveals candidate genetic mechanisms for adaptive divergence and reproductive isolation. Molecular Ecology.
Gravel D, Massol F, Leibold MA. 2016. Stability and complexity in model meta-ecosystems. Nature Communications 7. Link
Gustison ML, Semple S, Ferrer-i-Cancho R, Bergman TJ. 2016. Gelada vocal sequences follow Menzerath’s linguistic law. Proceedings of the National Academy of Sciences. Link
Guven et al. 2016. Hydrogen peroxide induced loss of heterozygosity correlates with replicative lifespan and mitotic asymmetry in Saccharomyces cerevisiae. PeerJ 4: e2671. Link
Guzzetta et al. 2016. Potential Risk of Dengue and Chikungunya Outbreaks in Northern Italy Based on a Population Model of Aedes albopictus (Diptera: Culicidae). PLoS Neglected Tropical Diseases 10(6): e0004762. Link
Hamelin FM, Allen LJ, Prendeville HR, Hajimorad MR, Jeger MJ. 2016. The evolution of plant virus transmission pathways. Journal of Theoretical Biology 396: 75-89. Link
Hamerlinck G, Lemoine NP, Hood GR, Abbott KC, Forbes AA. 2016. Meek mothers with powerful daughters: Effects of novel host environments and small trait differences on parasitoid competition. Oikos. Link
Hebert MP, Allen LJS. 2016. Disease outbreaks in plant-vector-virus models with vector aggregation and dispersal. Discrete and Continuous Dynamical Systems-B.
Hellweger FL, Clegg RJ, Clark JR, Plugge CM, Kreft JU. 2016. Advancing microbial sciences by individual-based modelling. Nature Reviews Microbiology 14(7): 461-471. Link
Hoban et al. 2016. Finding the genomic basis of local adaptation in non-model organisms: Pitfalls, practical solutions and future directions. American Naturalist. Link
Hopkins JB, Ferguson JM, Tyers D, Kurle CM. 2016. A framework for testing competing diet models: A bear necessity. Ecology.
Huang Y, Lechowicz MJ, Zhou D, Price CA. 2016. Evaluating general allometric models: Interspecific and intraspecific data tell different stories due to interspecific variation in stem tissue density and leaf size. Oecologia 180(3): 671-684. Link
Iacona G, Price FD, Armsworth PR. 2016. Predicting the presence and cover of management relevant invasive plant species on protected areas. Journal of Environmental Management 166: 537-543. Link
Iacona GD, Bode M, Armsworth PR. 2016. Limitations of outsourcing on‐the‐ground biodiversity conservation. Conservation Biology. Link
Ingersoll TE, Sewall BJ, Amelon SK. 2016. Effects of white-nose syndrome on regional population patterns of 3 hibernating bat species. Conservation Biology 30(5): 1048. Link
Iwai et al. 2016. Piphillin: Improved Prediction of Metagenomic Content by Direct Inference from Human Microbiomes. PLoS ONE, 11(11): e0166104. Link
Jhwueng DC, Maroulas V. 2016. Adaptive trait evolution in random environment. Journal of Applied Statistics. Link
Jones D. 2016. Socially enforced nepotism: How norms and reputation can amplify kin altruism. PLoS ONE 11(6): e0155596. Link
Kaplan M, Manore C, Bagamian KH. 2016. Agent-based hantavirus transmission model incorporating host behavior and viral shedding heterogeneities derived from field transmission experiments. Letters in Biomathematics 3: 209.
Kawano SM, Economy DR, Kennedy MS, Dean D, Blob RW. 2016. Comparative limb bone loading in the humerus and femur of the tiger salamander, Ambystoma tigrinum: Testing the "mixed-chain" hypothesis for skeletal safety factors. Journal of Experimental Biology 219: 341-353. Link
Kelly MR, Tien JH, Eisenberg MC, Lenhart S. 2016. The impact of spatial arrangements on epidemic disease dynamics and intervention strategies. Journal of Biological Dynamics 10(1): 222-249. Link
Kelly MR, Xing YL, Lenhart S. 2016. Optimal fish harvesting for a population modeled by a nonlinear parabolic partial differential equation. Natural Resource Modeling 29(1): 36-70. Link
Kershenbaum et al. 2016. Disentangling canid howls across multiple species and subspecies: Structure in a complex communication channel. Behavioural Processes 124: 149-157. Link
Koffel T, Daufresne T, Massol F, Klausmeier CA. 2016. Geometrical envelopes: Extending graphical contemporary niche theory to communities and eco-evolutionary dynamics. Journal of Theoretical Biology 407: 271-289. Link
Link
Krueger-Hadfield S, Hoban S. 2016. The importance of effective sampling for exploring the population dynamics of haplo-diploid organisms. Journal of Phycology 52: 1-9. Link
Kubatko L, Shah P, Herbei R, Gilchrist MA. 2016. A codon model of nucleotide substitution with selection on synonymous codon usage. Molecular Phylogenetics and Evolution 94: 290-297. Link
Lancaster EP, Lenhart S, Ojogbo EJ, Rekant SI, Scott JR, Weimer H, New JC. 2016. Modeling interventions in the owned cat population to decrease numbers, Knox County, TN. Journal of Applied Animal Welfare Science 19(4): 396-407. Link
Ledbetter A. 2016. The implementation of mathematical modeling in health care and its relation to nursing. Fall 2016 Mathematics Senior Seminar Paper.
LeGrand EK, Day J. 2016. Self-harm to preferentially harm the pathogens within: Non-specific stressors in innate immunity. Proceedings of the Royal Society B 283: 20160266. Link
Leiboff S, DeAllie CK, Scanlon MJ. 2016. Modeling the Morphometric Evolution of the Maize Shoot Apical Meristem. Frontiers in Plant Science 7: 1651. Link
Leinster T, Meckes MW. 2016. Maximizing diversity in biology and beyond. Entropy 18(3): 88. Link
Lenhart S, Xiong J, Yong JM. 2016. Optimal controls for stochastic partial differential equations with an application in population modeling. SIAM Journal on Control and Optimization 54(2): 495-535. Link
Levy B. 2016. Dissertation: Modeling feral hogs in Great Smoky Mountains National Park.
Magombedze G, Eda S, Stabel J. 2016. Predicting the role of IL-10 in the regulation of the adaptive immune responses in Mycobacterium avium subsp. paratuberculosis infections using mathematical models. PLOS One 10(11): e0141539. Link
Magombedze G, Seda S, Marteen E, Koets A. 2016. Can immune response mechanisms explain the fecal shedding patterns of cattle infected with Mycobacaterium avium subspecies paratuberculosis?. PLoS ONE 11(1): e0146844. Link
Magombedze G, Shiri T, Seda S, Stabel J. 2016. Predicting Mycobacterium avium subsp. paratuberculosis infection disease progression using immune markers (Th1 and Th2) in fecal CFU shedding animals.
Mallela A, Lenhart S, Vaidya NK. 2016. HIV-TB co-infection treatment: Modeling and optimal control theory perspectives. Journal of Computational and Applied Mathematics. 2016 Dec 1;307:143-61. Link
Manlove et al. 2016. One health or three? Publication silos among the One Health disciplines. PLoS Biology 14(4): e1002448. Link
Matzke N. 2016. The evolution of antievolution policies after Kitzmiller v. Dover. Science 351(6268): 10-12. Link
Matzke NJ, Wright A. 2016. Inferring node dates from tip dates in fossil Canidae: the importance of tree priors. Biology Letters 12(8). Link
McDaniel MM, Krishna N, Handagama WG, Eda S, Ganusov VV. 2016. Quantifying limits on replication of death, and quiescence of Mycobacterium tuberculosis in mice. Frontiers in Microbiology. Link
McInroe et al. 2016. Robotic and mathematical modeling reveals principles of appendage coordination in terrestrial locomotion. Integrative and Comparative Biology 56: E145. Link
McInroe et al. 2016. Tail use improves soft substrate performance in models of early vertebrate land locomotors. Science. Link
Mesterton-Gibbons M, Dai Y, Goubault M. 2016. Modeling the evolution of winner and loser effects: A survey and prospectus. Mathematical Biosciences 274(2016): 33-44. Link
Mickens R. 2016. Mathematical and numerical comparisons of five single-population growth models. Journal of Biological Dynamics 10(1): 95-103. Link
Milt AW, Gagnolet T, Armsworth PR. 2016. Synergies and tradeoffs among environmental impacts under conservation planning of shale gas surface infrastructure. Environmental Management 57(1): 21-30. Link
Munther et al. 2016. Modeling cross-contamination during poultry processing: Dynamics in the chiller tank. Food Control 59: 271-281. Link
Neilan RM, Christley S, Oremland M, Salinas R, Lenhart S. 2016. Approximation and optimal control of the Sugarscape model using PDEs. Optimal Control, Applications and Methods.
Ngonghala CN, Teboh-Ewungkem MI, Ngwa GA. 2016. Observance of period-doubling bifurcation and chaos in an autonomous ODE model for malaria with vector demography. Theoretical Ecology 9(3): 337. Link
Ngonghala C, Mohammed-Awel J, Zhao R, Prosper O. 2016. Interplay between insecticide-treated bed-nets and mosquito demography: Implications for malaria control. Journal of Theoretical Biology 397(2016): 179–192. Link
Nicol et al. 2016. A management-oriented framework for selecting metrics to assess habitat- and pathway-specific contributions to spatially-structured populations. Ecological Indicators 69: 792-802. Link
Oremland M, DeAngelis C, Susmann H, Twohy E, Laubenbacher R. 2016. A framework for solving optimization problems for agent-based models.
Palagi E, Cordoni G, Demuru E, Bekoff M. 2016. Fair play and its connection with social tolerance, reciprocity and the ethology of peace. Behaviour. Link
Palagi E, Fouts HN. 2016. Motivation of play: From ethological to neurological perspectives. Behaviour 153(6-7): 655-662. Link
Palagi E, Nicotra V, Cordoni G. 2016. Rapid mimicry and emotional contagion in domestic dogs. Royal Society Open Science. Link
Palagi et al. 2016. Rough-and-tumble play as a window on animal communication. Biological Reviews 91: 311-327.
Pantha B, Day J, Lenhart S. 2016. Optimal control applied in an anthrax epizootic model. Journal of Biological Systems 24(4): 495. Link
Parobek CM, Archer FI, DePrenger-Levin ME, Hoban SM, Liggins L, Strand AE. 2016. skeleSim: an extensible, general framework for population genetic simulation in R. Molecular Ecology Resources. Link
Peace A, Poteat MD, Wang H. 2016. Somatic Growth Dilution of a toxicant in a predator–prey model under stoichiometric constraints. Journal of Theoretical Biology 407:198-211. Link
Pedersen EJ, Marleau JN, Granados M, Moeller HV, Guichard F. 2016. Nonhierarchical dispersal promotes stability and resilience in a tritrophic metacommunity. Amerian Naturalist 187(5): E116-E128. Link
Pellis SM, Pellis VC. 2016. Play fighting in Visayan warty pigs (Sus cebifrons): Insights on restraint and reciprocity in the maintenance of play. Behaviour 153(6-7): 727-747. Link
Perez-Velazquez J, Gevertz JL, Karolak A, Rejniak KA. 2016. Microenvironmental Niches and Sanctuaries: a Route to Acquired Resistance. Advances in Experimental Medicine and Biology 936: 149. Link
Pietraszewski D. 2016. How the mind sees coalitional and group conflict: The evolutionary invariances of n-person conflict dynamics. Evolution and Human Behavior. Link
Play, Evolution, and Sociality WG Members. 2016. Behaviour, Volume 153, Special Issue: Motivation of Play.
Pollard BS. 2016. Open Markov processes: A compositional perspective on non-equilibrium steady states in biology. Entropy 18(4).
Poudel R, Jumpponen A, Schlatter DC, Paulitz TC, Gardener BB, Kinkel LL, Garrett KA. 2016. Microbiome networks: A systems framework for identifying candidate microbial assemblages for disease management. Phytopathology 106(10): 1083-1096. Link
Prescott AM, McCollough, FM, Eldreth BL, Binder BM, Abel SM. 2016. Analysis of network topologies underlying ethylene growth response kinetics. Frontiers in Plant Sciences.
Prokop ZM, Drobniak SM. 2016. Genetic variation in male attractiveness: It's time to see the forest for the trees. Evolution. Link
Rao AR, Cecchi GA, Kaplan E (eds). 2016. Towards an integrated approach to measurement, analysis and modeling of cortical networks. Lausanne: Frontiers Media. Link
Read Q, Hoban S, Schweitzer J, Eppinga M, and Bailey J. 2016. Accounting for the nested nature of genetic variation across levels of organization improves our understanding of biodiversity and community ecology. Oikos. Link
Rejniak KA. 2016. Circulating Tumor Cells: When a Solid Tumor Meets a Fluid Microenvironment. Advances in Experimental Medicine and Biology 936: 93. Link
Ribeiro TL, Ribeiro S, Copelli M. 2016. Repertoires of spike avalanches are modulated by behavior and novelty. Frontiers in Neural Circuits 10. Link
Rice WR, Friberg U, Gavrilets S. 2016. Sexually antagonistic epigenetic marks that canalize sexually dimorphic development. Molecular Ecology 25(8): 1812–1822. Link
Rodhouse TH, Philippi TE, Monahan WB, Castle KT. 2016. A macroecological perspective on bat conservation in a 2nd-century National Park Service. Ecosphere, 7(11): e01 Link
Rohr JR, Salice CJ, Nisbet RM. 2016. The pros and cons of ecological risk assessment based on data from different levels of biological organization. Critical Reviews in Toxicology.
Rú et al. 2016. Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: Implications for biotic selection of microbial communities. Frontiers in Microbiology. Link
Rua et al. 2016. Home-field advantage? Evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis. BMC Evolutionary Biology 16: 122. Link
Ryan D, Sanchirico JN, Toews C, Armsworth PR. 2016. Implications of policy adjustment costs for fisheries management. Natural Resources Modeling.
Schultz I, Watanabe K. 2016. Ch 16: The development of quantitative AOPs. Cheryl Murphy & Natalia Reyero (eds.), A Systems Biology Approach to Advancing Adverse Outcome Pathways for Risk Assessment.
Sgouralis I, Layton AT. 2016. Conduction of feedback-mediated signal in a computational model of coupled nephrons. Mathematical Medicine and Biology 33(1): 87-106. Link
Sgouralis I, Maroulas V, Layton AT. 2016. Transfer function analysis of dynamic blood flow control in the rat kidney. Bulletin of Mathematical Biology 78(5): 923-960. Link
Sherman et al. 2016. Are college students’ assessments of threat shaped by the dangers of their childhood environment? Journal of Interpersonal Violence 31: 2006. Link
Shizuka D, Farine DR. 2016. Measuring the robustness of network community structure using assortativity. Animal Behaviour 112: 237-246. Link
Sims C, Finnoff D, O’Regan SM. 2016. Public control of rational and unpredictable epidemics. Journal of Economic Behavior & Organization. Link
Siviy SM. 2016. A brain motivated to play: Insights into the neurobiology of playfulness. Behaviour 153(6-7): 819-844. Link
Slater et al. 2016. Impact of the shedding level on transmission of persistent infections in Mycobacterium avium subspecies paratuberculosis (MAP). Veterinary Research 47(1): 38. Link
Smaldino PE, Janssen MA, Hillis V, Bednar J. 2016. Adoption as a social marker: Innovation diffusion with outgroup aversion. Journal of Mathematical Sociology 41(1): 26. Link
Smith et al. 2016. Leadership in mammalian societies: Emergence, distribution, power, and payoff. Trends in Ecology & Evolution 31(1): 54-66. Link
Spinka M, Paleckova M, Rehakova M. 2016. Metacommunication in social play: The meaning of aggression-like elements is modified by play face in Hanuman langurs (Semnopithecus entellus). Behaviour 153(6-7): 727-747. Link
Swedlund AC, Sattenspiel L, Warren A, Meindl RS, and Gumerman GJ III. 2016. Explorations in paleodemography: An overview of the Artificial Long House Valley agent-based modeling project, with new observations on demographic estimation. In Zuckerman MK, Martin D (eds) New Directions in Biocultural Anthropology, Wiley-Blackwell (in press).
Taylor CM, Laughlin AJ, Hall RJ. 2016. The response of migratory populations to phenological change: A Migratory Flow Network modeling approach. Journal of Animal Ecology. 2016 Feb 1. Link
Trisko RK, Sandel AA, Smuts B. 2016. Affiliation, dominance and friendship among companion dogs. Behaviour 153(6-7): 693-725. Link
Van Dam M, Matzke NJ. 2016. Evaluating the influence of connectivity and distance on biogeographic patterns in the Southwestern deserts of North America. Journal of Biogeography. Link
Vernesi et al. 2016. Ecology, environment and evolutionary history influence genetic structure in five mammal species from Italian Alps. Biological Journal of the Linnean Society. Link
Viswanathan R, Liang S, Yang Y, Jungck JR. 2016. Biographer: Visualization of graph theoretical patterns, measurements, and analysis in mathematical biology. In Rubem P Mondaini, Editor. BIOMAT 2015. World Scientific: Singapore, pp. 118-140. Link
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Weitz JS. 2016. Quantitative viral ecology: Dynamics of viruses and their microbial hosts. Princeton University Press. ISBN: 9780691161549 Link
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   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Publications 2015 Online
Abbott et al. 2015. Spatial heterogeneity in soil microbes alters outcomes of plant competition. PLoS One 10(5): e0125788. Link
Agusto FB, Gumel AB, Parham PE. 2015. Qualitative assessment of the role of temperature variations on malaria transmission dynamics. Journal of Biological Systems 23(4): 597-630. Link
Akcay E. 2015. Evolutionary models of mutualisms. In: Bronstein J (ed.), Mutualism, Oxford University Press.
Albert R, Robeva R. 2015. Signaling Networks: Asynchronous Boolean models. In Robeva R (ed) Algebraic and Discrete Mathematical Methods for Modern Biology, Academic Press, pp. 65-91.
Anderson et al. 2015. Abundance and phenology patterns of two pond-breeding salamanders determine species interactions in natural populations. Oecologia 177(3): 761-773. Link
Auerbach J, Kanarek AR, Burghardt GM. 2015. To play or not to play? That’s a resource abundance question. Adaptive Behavior 23(6): 354-361. Link
Ayers C, Armsworth P, Brosi B. 2015. Determinism as a statistical metric for ecologically important recurrent behaviors with trapline foraging as a case study. Behavioral Ecology and Sociobiology 69(8): 1395-1404. Link
Bauer JT, Mack KLM, Bever JD. 2015. Plant-soil feedbacks as drivers of succession: Evidence from remnant and restored tallgrass prairies. Ecosphere 6(9): article 158.
Beaulieu JM, O'Meara BC, Crane P, Donoghue MJ. 2015. Heterogeneous Rates of Molecular Evolution and Diversification Could Explain the Triassic Age Estimate for Angiosperms. Systematic Biology 64(5): 869-878. Link
Beaulieu JM, O'Meara BC. 2015. Extinction can be estimated from moderately sized molecular phylogenies. Evolution 69(4): 1036-1043. Link
Bell HC, Bell GD, Schank JA, Pellis SM. 2015. Evolving the tactics of play fighting: Insights from simulating the “keep away game” in rats. Adaptive Behavior 23: 371-380. Link
Benazzo A, Ghirotto S, Vilaca ST, Hoban S. 2015. Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source. Heredity, (2015): 1-11. Link
Berner D, Thibert-Plante X. 2015. How mechanisms of habitat preference evolve and promote divergence with gene flow. Journal of Evolutionary Biology 28(9): 1641-1655. Link
Bissonnette et al. 2015. Coalitions in theory and reality: A review of pertinent variables and processes. Behaviour 152(1): 1-56. Link
Boettiger et al. 2015. Optimal management of a stochastically varying population when policy adjustment is costly. Ecological Applications. Link
Botta F, Eriksen C, Fontaine MC, Guillot G. 2015. Enhanced computational methods for quantifying the effect of geographic and environmental isolation on genetic differentiation. Methods in Ecology and Evolution 6(11): 1270-1277. Link
Bowden TS, Ferguson JM, Ward RV, Taper ML, Willey DW. 2015. Breeding season home range and habitat use of Mexican Spotted Owls (Strix occidentalis lucida) Below the South Rim of Grand Canyon National Park. The Wilson Journal of Ornithology 127(4): 678-689. Link
Burghardt L, Metcalf J, Donohue K. 2015. A cline in seed dormancy helps conserve the environment experienced during reproduction across the range of A. thaliana. American Journal of Botany 103(1): 47-59. Link
Cai YJ, Huang JH, Maroulas V. 2015. Large deviations of mean-field stochastic differential equations with jumps. Statistics & Probability Letters 96: 1-9. Link
Carvalho BM, Rangel EF, Ready PD, Vale MM. 2015. Ecological niche modelling predicts southward expansion of Lutzomyia (Nyssomyia) flaviscutellata (Diptera: Psychodidae:Phlebotominae), vector of Leishmania (Leishmania) amazonensis in South America, under climate change. PLoS ONE 10(11): e0143282. Link
Castro-Ibanez I, Gil MI, Tudela JA, Ivanek R, Allende A. 2015. Assessment of microbial risk factors and impact of meteorological conditions during production of baby spinach in the Southeast of Spain. Food Microbiology 49: 173-181. Link
Chen S, Ilany A, White BJ, Sanderson MW, Lanzas C. 2015. Spatial-temporal dynamics of high-resolution animal networks: What can we learn from domestic animals?. PLOS One 10(6): e01292.
Chen S, Lee C, Sanderson M, Lanzas C. 2015. Transmissibility of multiple serotype shiga-toxigenic Escherichia coli in feedlots.
Cho EC. 2015. Application of algebraic topology to data analysis. Seoul National University, South Korea.
Ciocanel V, Stepien TL, Edwards A, Layton AT. 2015. Modeling autoregulation of the afferent arteriole of the rat kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology.
Cooper JK, Spencer M, Bruno JF. 2015. Stochastic dynamics of a warmer Great Barrier Reef. Ecology 96(7): 1802-1811. Link
Cordoni G, Palagi E. 2015. Aggression and hierarchical steepness inhibit social play in adult wolves. Behaviour. Link
Cornetti L, Ficetola GF, Hoban S, Vernesi C. 2015. Genetic and ecological data reveal species boundaries between viviparous and oviparous lizard lineages. Heredity 115(6): 517-526. Link
Crawley C. 2015. Modeling the effects of storm surges on coastal vegetation. In H. Kaper and C. Rousseau (Eds), Mathematics of Planet Earth (pp. 193-4). Philadelphia: Society for Industrial and Applied Mathematics.
Day JD, Metes DM, Vodovotz Y. 2015. Mathematical modeling of early cellular innate and adaptive immune responses to ischemia/reperfusion injury and solid organ allotransplantation. Frontiers in Immunology. Link
Day SW, Higham TE, Holzman R, Van Wassenbergh S. 2015. Morphology, kinematics, and dynamics: The mechanics of suction feeding in fishes. Integrative and Comparative Biology 55(1): 21-35. Link
Dembo M, Matzke NJ, Mooers AO, Collard M. 2015. Bayesian analysis of a morphological supermatrix sheds light on controversial fossil hominin relationships. Proceedings of the Royal Society B 282(1812): 133-141. Link
Donahue MJ, Karnauskas M, Toes C, Paris CB. 2015. Location isn’t everything: Timing of spawning aggregations optimizes larval replenishment. PLoS One 10(6): e0130694. Link
Donohue K, Burghardt LT, Runcie D, Bradford KJ, Schmitt J. 2015. Applying developmental threshold models to evolutionary ecology. Trends in Ecology & Evoluiton 30(2): 66-77. Link
Dorazio RM, Connor EF, Askins RA. 2015. Estimating the effects of habitat and biological interactions in an avian community. PLoS ONE 10(8): e0135987. Link
Dornburg A, Moore J, Beaulieu JM, Eytan RI, Near TJ. 2015. The impact of shifts in marine biodiversity hotspots on patterns of range evolution: Evidence from the Holocentridae (squirrelfishes and soldierfishes). Evolution 69(1): 146-161. Link
Durand S, Schank JC. 2015. The evolution of social play by learning to cooperate. Adaptive Behavior 23: 340-353. Link
Earl JE, Semlitsch RD. 2015. Effects of tannin source and concentration from tree leaves on two species of tadpoles. Environmental Toxicology and Chemistry 34(1): 120-126. Link
Earl JE, Whiteman HH. 2015. Are commonly used fitness predictors accurate? A meta-analysis of amphibian size and age at metamorphosis. Copeia 103(2):297-309. Link
Edelaar P, et al. 2015. Shared genetic diversity across the global invasive range of the monk parakeet suggests a common restricted geographic origin and the possibility of convergent selection. Molecular Ecology 24(9): 2164-2176. Link
Edwards S. 2015. Phylogenetic evidence of selection at reproductive genes in promiscuous songbirds.
Egizi A, Fefferman NH, Fonseca DM. 2015. Evidence that implicit assumptions of 'no evolution' of disease vectors in changing environments can be violated on a rapid timescale. Philosophical Transactions of the Royal Society B: Biological Sciences 370 (1665). Link
Eisenberg S, Rutten V, Koets AP. 2015. Dam Mycobacterium avium subspecies paratuberculosis (MAP) infection status does not predetermine calves for future shedding when raised in a contaminated environment: A cohort study. Special Issue of Veterinary Research 46:70. Link
Erickson et al. 2015. Assessing local population vulnerability with branching process models: An application to wind energy development. Ecosphere 6(12): 1-14. Link
Farrior CE, Rodriguez-Iturbe I, Dybzinski R, Levin SA, Pacala SW. 2015. Decreased water limitation under elevated CO2 amplifies potential for forest carbon sinks. PNAS. Link
Ferguson et al. 2015. An updated perspective on the role of environmental autocorrelation in animal populations. Theoretical Ecology. Link
Ferguson J, Ponciano JM. 2015. Evidence and implications of higher order scaling in the environmental variation of animal population growth. Proceedings of the National Academy of Sciences. Link
Franca et al. 2015. D2 dopamine receptor regulation of learning, sleep and plasticity. European Neuropsychopharmacology 25(4): 493-504.
Franz M, Altmann J, Alberts SC. 2015. Knockouts of high-ranking males have limited impact on baboon social networks. Current Zoology 61: 107–113. Link
Ganusov V, Klinkenberg D, Bakker D, Koets A. 2015. Evaluating contribution of the cellular and humoral immune responses to the control of shedding of Mycobacterium avium spp. paratuberculosis in cattle. Special Issue of Veterinary Research 46:62. Link
Gao J, Hu J, Liu F, Cao Y. 2015. Multiscale entropy analysis of biological signals: A fundamental bi-scaling law. Frontiers in Computational Neuroscience 9: 64. Link
Gaoue OG, Jiang J, Ding W, Agusto FB, Lenhart S. 2015. Optimal harvesting strategies for timber and non-timber forest products in tropical ecosystems. Theoretical Ecology.
Gaoue OG, Ngonghala CN, Jiang J, Maud L. 2015. Towards a mechanistic understanding of the synergistic effects of harvesting timber and non-timber forest products. Methods in Ecology and Evolution. Link
Gaoue OG. 2015. Transient dynamics reveal the importance of early life survival to the response of a tropical plant to harvest. Journal of Applied Ecology 53(1): 112-119. Link
Gavrilets S. 2015. Collective action and the collaborative brain. Journal of the Royal Society Interface 12(102): article 20141067. Link
Gavrilets S. 2015. Collective action problem in heterogeneous groups. Philosophical Transactions of the Royal Society B-Biological Sciences 370(1683). Link
Gerkin RC, Castro JB. 2015. The number of olfactory stimuli that humans can discriminate is still unknown. eLife 4: e08127. Link
Ghosh-Dastidar U, Lenhart S. 2015. Modeling the Effect of Vaccines on Cholera Transmission. Journal of Biological Systems 23(2).
Ghosh-Dastidar U. 2015. Modeling the effect of vaccines on cholera transmission. Journal of Biological Systems 23(2): 323-338. Link
Gilchrist MA, Chen WC, Shah P, Landerer CL, Zaretzki R. 2015. Estimating Gene Expression and Codon-Specific Translational Efficiencies, Mutation Biases, and Selection Coefficients from Genomic Data Alone. Genome Biology and Evolution 7(6): 1559-1579. Link
Gilman RT, Kozak G. 2015. Learning to speciate: The biased learning of mate preferences promotes adaptive radiation. Evolution 69(11): 3004-3012.
Godsoe W, Murray R, Plank MJ. 2015. Information on biotic interactions improves transferability of distribution models. The American Naturalist 185(2): 281-290. Link
Godsoe W, Murray R, Plank MJ. 2015. The effect of competition on species’ distributions depends on coexistence, rather than scale alone. Ecography 38(11): 1071-1079. Link
Gonzalez-Forero M. 2015. Stable eusociality via maternal manipulation when resistance is costless. Journal of Evolutionary Biology 28(12): 2208-2223. Link
Gorecki P, Eulenstein O. 2015. Gene tree diameter for deep coalescence. IEEE-ACM Transactions on Computational Biology and Bioinformatics 12(1): 155-165. Link
Gray MJ, Brunner JL, Earl JE, Ariel E. 2015. Design and analysis of ranavirus studies: Surveillance and assessing risk. In: M.J. Gray and V.G. Chinchar, eds. Ranaviruses: Lethal Pathogens of Ectothermic Vertebrates, pg 209-240, Springer.
Greening BR, Pinter-Wollman N, Fefferman NH. 2015. Higher-order interactions: Understanding the knowledge capacity of social groups using simplicial sets. Current Zoology 61(1): 114-127. Link
Grohn Y, Koets A (eds.). 2015. Modeling Johne's disease: From the inside out. Special Issue of Veterinary Research. Link
Grunloh N, Mangel M. 2015. State-dependent behavioral theory and the evolution of play. Adaptive Behavior 23: 362-370. Link
Hoban S, Strand A, Fraga N, Richards C, Schlarbaum S. 2015. Developing quantitative seed sampling protocols using simulations: A reply to comments from Guja et al. and Guerrant et al.. Biological Conservation 184: 469-470. Link
Hoban S, Strand A. 2015. Ex situ seed collections will benefit from considering spatial sampling design and species' reproductive biology. Biological Conservation 187: 182-191. Link
Hobson EA, DeDeo S. 2015. Social feedback and the emergence of rank in animal society. PLOS Computational Biology. Link
Hobson EA, John DJ, Mcintosh TL, Avery ML, Wright TF. 2015. The effect of social context and social scale on the perception of relationships in monk parakeets. Current Zoology 61(1): 55-69. Link
Hobson EA, John DJ, Mcintosh TL, Avery ML, Wright TF. 2015. The effect of social context and social scale on the perception of relationships in monk parakeets. Current Zoology 61: 55–69. Link
Hoeksema JD, Bruna EM. 2015. Context-dependent outcomes in mutualisms. In: Brontein J (ed.), Mutualism, Oxford University Press.
Holzman R, China V, Yaniv S, Zilka M. 2015. Hydrodynamic Constraints of Suction Feeding in Low Reynolds Numbers, and the Critical Period of Larval Fishes. Integrative and Comparative Biology 55(1): 48-61. Link
Houle D, Meyer K. 2015. Estimating sampling error of evolutionary statistics based on genetic covariance matrices using maximum likelihood. Journal of Evolutionary Biology 28(8): 1542-1549. Link
Hughes JS, Cobbold CA, Haynes K, Dwyer G. 2015. Effects of forest spatial structure on insect outbreaks: Insights from a host-parasitoid model. The American Naturalist 185(5): E130-E152. Link
Ilany A, Booms AS, Holekamp KE. 2015. Structural constraints on long-term social network dynamics in a wild mammal. Ecology Letters 18: 687-695.
Ilany A, Booms AS, Holekamp KE. 2015. Topological effects of network structure on long-term social network dynamics in a wild mammal. Ecology Letters 18(7): 687-695. Link
Jiang et al. 2015. Defining the next generation modeling of coastal ecotone dynamics in response to global change. Ecological Modelling 326: 168-176. Link
Jiang J, Moore JAM, Priyadarshi A, Classen AT. 2015. Resource mediated plant-mycorrhizal interactions confers coexistence of plants.
Jiang Y, Qin H, Yang L. 2015. Using network clustering to predict copy number variations associated with health disparities. PeerJ 3: e677. Link
Joshi HR, Lenhart S, Hota S, Agusto F. 2015. Optimal control of an SIR model with changing behavior through an education campaign. Electronic Journal of Differential Equations 2015(50): 1-14. Link
Kanarek AR, Webb CT, Barfield M, Holt RD. 2015. Overcoming Allee effects through evolutionary, genetic, and demographic rescue. Journal of Biological Dynamics 9(1): 15-33. Link
Kawano SM, Blob RW. 2015. Mixed chains of safety factors in the limb bones of salamanders: Implications for differential limb function in the evolution of terrestrial locomotion. Integrative and Comparative Biology 55: E94-E94.
Kershenbaum A, Freeberg TM, Gammon DE. 2015. Estimating vocal repertoire size is like collecting coupons: A theoretical framework with heterogeneity in signal abundance. Journal of Theoretical Biology 373(2015): 1-11. Link
Kershenbaum A, Garland EC. 2015. Quantifying similarity in animal vocal sequences: Which metric performs best?. Methods in Ecology and Evolution. Link
Kingsolver JG, Heckman N, Zhang J, Carter PA, Knies JL, Stinchcombe J. 2015. Genetic Variation, Simplicity, and Evolutionary Constraints for Function-Valued Traits. The American Naturalist 166: E166-E181. Link
Klinkenberg D, Koets A. 2015. The long subclinical phase of Mycobacterium avium ssp. paratuberculosis infections explained without adaptive immunity. Special Issue of Veterinary Research 46:63. Link
Koets A, Eda S, Sreevatsan S. 2015. The within host dynamics of Mycobacterium avium ssp. paratuberculosis infection in cattle: Where time and place matter. Special Issue of Veterinary Research 46:61. Link
Koets AP, Grohn YT. 2015. Within- and between-host mathematical modeling of Mycobacterium avium subspecies paratuberculosis (MAP) infections as a tool to study the dynamics of host-pathogen interactions in bovine paratuberculosis. Special Issue of Veterinary Research 46:60. Link
Koykka C, Wild G. 2015. The evolution of group dispersal with leaders and followers. Journal of Theoretical Biology. Link
Kramer SC, Bansal S. 2015. Assessing the use of antiviral treatment to control influenza. Epidemiology and Infection 143(8): 1621. Link
Krishna NA, Pennington HM, Coppola CD, Eisenberg MC, Schugart RC. 2015. Connecting local and global sensitivities in a mathematical model for wound healing. ​Bulletin of Mathematical Biology 77(12):2294-2324. Link
Krivan V, Priyadarshi A. 2015. L-shaped prey isocline in the Gause predator-prey experiments with a prey refuge. Journal of Theoretical Biology 370(2015): 21-26. Link
Kulkarni K, Visweswaran R, Zhao X, Tolkacheva EG. 2015. Characterizing Spatial Dynamics of Bifurcation to Alternans in Isolated Whole Rabbit Hearts Based on Alternate Pacing. BioMed Research International 2015: 170768. Link
Landscape Genomic WG. 2015. A perspective on the pitfalls of experimental design in landscape genomic studies.
Langlais M. 2015. Remarks on the number of persistent states to a fragmented predator-prey model system. Ecological Complexity 21: 246-259. Link
Lanzas C, Chen S. 2015. Complex System Modeling for Veterinary Epidemiology. Preventive Veterinary Medicine 118(2-3): 207-214. Link
Laricchia KM, McCleary TS, Hoban SM, Borkowski D, Romero-Severson J. 2015. Chloroplast haplotypes suggest preglacial differentiation and separate postglacial migration paths for the threatened North American forest tree Juglans cinerea L. Tree Genetics and Genomes 11(2). Link
Layton AT, Edwards A. 2015. Introduction to mathematical modeling of blood flow control in the kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology.
Leander R, Lenhart S, Protopopescu V. 2015. Controlling synchrony in a network of Kuramoto oscillators with time-varying coupling. Physica D-Nonlinear Phenomena 301: 36-47. Link
Leander R, Lenhart S, Protopopescu V. 2015. Optimal control of continuous systems with impulse controls. Optimal Control Applications & Methods 36(4): 535-549. Link
Levi T, Keesing K, Oggenfuss K, Ostfeld RS. 2015. Accelerated phenology of blacklegged ticks under climate warming. Philosophical Transactions of the Royal Society B: Biological Sciences 370(1665): 20130556. Link
Leviyang S, Ganusov V. 2015. Broad CTL Response in early HIV infection drives multiple concurrent CTL escapes. PLoS Computational Biology 11(10): e1004492. Link
Levy B, Collincs C, Lenhart S, Stiver W. 2015. Evaluating wild hog preferences and control strategies in Great Smoky Mountains National Park. Mathematical Biosciences and Engineering.
Levy B, Collins C, Lenhart S, Madden M, Corn J, Salinas RA, Stiver W. 2015. Modeling feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling.
Levy et al. 2015. A metapopulation model for feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling 29(1): 71-97. Link
Li Y, Gaillard JR, McLaughlin T, Sorensen TIA, Periwal V. 2015. Macro fat and micro fat: Insulin sensitivity and gender dependent response of adipose tissue to isocaloric diet change. Adipocyte 4(4): 256-263. Link
Loeb et al. 2015. A plan for the North American Bat Monitoring Program (NABat). General Technical Report GTR-SRS-208, USFS Southern Research Station, Asheville, SC. Link
Louzoun Y, Mitchell R, Behar H, Schukken Y. 2015. Two state model for a constant disease hazard in paratuberculosis (and other bovine diseases). Special Issue of Veterinary Research 46:67. Link
Maikai BV, Umoh JU, Maikai VA. 2015. Insight into malaria transmission and control in endemic areas. International Society for Disease Surveillance 7(1): e198. Link
Maroulas V, Nebenfuehr A. 2015. Tracking rapid intracellular movements: A Bayesian random set approach. Annals of Applied Statistics 9(2): 926-949. Link
Martcheva et al. 2015. An immuno-epidemiological model for Johne’s disease in cattle. Special Issue of Veterinary Research 46:69. Link
Martin RA, McGee MD, Langerhans RB. 2015. Predicting ecological and phenotypic differentiation in the wild: A case of piscivorous fish in a fishless environment. Biological Journal fo the Linnean Society 114(3): 588-607. Link
Martinez MV, Lenhart S, White KAJ. 2015. Optimal control of integrodifference equations in a pest-pathogen system. Discrete and Continuous Dynamical Systems - Series B 20(6): 1759-1783. Link
Mcinroe BM, Astley HC, Kawano SM, Blob RW, Goldman DL. 2015. Biological and robotic modeling of the evolution of legged locomotion on land. Integrative and Comparative Biology 55: E123-E123.
Meik JM, Streicher JW, Lawing AM, Flores-Villela O, Fujita MK. 2015. Limitations of climatic data for inferring species boundaries: Insights from speckled rattlesnakes. PLOS One 10(6): e0131435. Link
Meyer EL, Matzke NJ, Williams SJ. 2015. Remote sensing of intertidal habitats predicts West Indian topsnail population expansion but reveals scale-dependent bias. Journal of Coastal Conservation 19(2): 107-118. Link
Miller L. 2015. NIMBioS research collaboration workshop for women in mathematical biology. AWM Newsletter 45(5): 5-7. Link
Mitchell et al. 2015. Differences in intermittent and continuous fecal shedding patterns between natural and experimental Mycobacterium avium subspecies paratuberculosis infections in cattle. Special Issue of Veterinary Research 46:66. Link
Mitrou N, Scully CG, Braam B, Chon KH, Cupples WA. 2015. Laser speckle contrast imaging reveals large-scale synchronization of cortical autoregulation dynamics influenced by nitric oxide. American Journal of Physiology Renal Physiology 308(7): F661-F670. Link
Moore JAM, Jiang J, Post WM, Classen AT. 2015. Decomposition by ectomycorrhizal fungi alters soil carbon storage in a simulation model. Ecosphere 6(3): article 29.
Munther D, Luo Y, Wu J, Magpantay FM, and Srinivasan P. 2015. A mathematical model for pathogen cross-contamination dynamics during produce wash. Food Microbiol 51: 101-7. Link
Noecker C, Schaefer K, Zaccheo K, Yang YD, Day J, Ganusov VV. 2015. Simple mathematical models do not accurately predict early SIV dynamics. Viruses 7(3): 1189-1217. Link
O’Regan SM, Lillie JW, Drake JM. 2015. Leading indicators of mosquito-borne disease elimination. Theoretical Ecology. Link
O'Meara BC, Graham KL, Pellis SM, Burghardt GM. 2015. Evolutionary models for the retention of adult-adult play in primates: The roles of diet and other factors associated with resource acquisition. Adaptive Behaviour 23: 381-391. Link
O'Regan SM, Vinson JE, Park A. 2015. Interspecific contact and competition may affect the strength and direction of disease-diversity relationships for directly transmitted microparasites. American Naturalist. Link
Oremland M, Laubenbacher R. 2015. Optimal harvesting for a predator-prey agent-based model using difference equations. Bulletin of Mathematical Biology. Link
Palagi E. 2015. Humans, other animals, and the biology of morality. In Crane JK (ed) Beastly Morality, Columbia University Press.
Parham PE et al. 2015. Climate, environmental and socio-economic change: Weighing up the balance in vector-borne disease transmission. Philosophical Transactions of the Royal Society B: Biological Sciences 370 (1665). Link
​Paudel S, Timilsina YP, Lewis J, Ingersoll T, Jnawali SR​. 2015. Population Status and habitat occupancy of endangered River dolphins in the Karnali River system of Nepal during low water season. Marine Mammal Science 31(2): 707​.
Pauley LR, Earl JE, Semlitsch RD. 2015. Ecological effects and human use of commercial mosquito insecticides in aquatic communities. Journal of Herpetology 49(1): 28-35. Link
Peace A. 2015. Effects of light, nutrients, and food chain length on trophic efficiencies in simple stoichiometric aquatic food chain models. Ecological Modelling 312: 125-135. Link
Pellis SM, Burghardt GM, Palagi E, Mangel M. 2015. Modeling play: Distinguishing between origins and current functions. Adaptive Behaviour 23: 331-339. Link
Pellis SM, Burghardt GM. 2015. Play and exploration. In Call J (ed.), Burghardt BM, Pepperberg I, Snowdon C, Zentall T (assoc. eds.), APA handbook of comparative psychology: Vol 1. Concepts, History, and Methods. Washington, DC: American Psychological Association.
Pinter-Wollman N. 2015. Editorial: An introduction to the special column on animal social networks. Current Zoology 61(1): 42-44. Link
Pinter-Wollman N. 2015. Persistent variation in spatial behavior affects the structure and function of interaction networks. Current Zoology 61(1): 98-106. Link
Pope et al. 2015. Whole genome comparison of a large collection of mycobacteriophages reveals a continuum of phage genetic diversity. eLife 2015: 4:e06416. Link
Rao AR, Cecchi GA, Kaplan E. 2015. Editorial: Towards an integrated approach to measurement, analysis and modeling of cortical networks. Frontiers in Neural Circuits 9: 61. Link
Reddy A, Liu Y, Munoz-Zanzi C, Convertino M. 2015. Eco-epidemiological scaling for early warning models of infectious diseases. PNAS.
Remien CH. 2015. Modeling the dynamics of stable isotope tissue-diet enrichment. Journal of Theoretical Biology 367: 14-20. Link
Reynolds HT, Ingersoll TE, Barton HA. 2015. Modeling the environmental growth of Pseudogymnoascus destructans and its impact on the white-nose syndrome epidemic. Journal of Wildlife Diseases 51(2): 318. Link
Robins et al. 2015. Agent-based model for Johne's disease dynamics in a dairy herd. Special Issue of Veterinary Research 46:68. Link
Rodhouse et al. 2015. Establishing a conservation baseline with dynamic distribution models for bats facing imminent decline. Diversity and Distributions 21: 1401-1413. Link
Ross C, Hooper P, Borgerhoff Mulder M. 2015. Data on the frequency of non-reproductive adults in a cross-cultural sample of small-scale human societies. bioRxiv. Link
Ryan D, Cantrell RS. 2015. Avoidance behavior in intraguild predation communities: A cross-diffusion model. Discrete and Continuous Dynamical Systems 35(4): 1641-1663.
Saldana et al. 2015. Risk factors associated with Trypanosoma cruzi exposure in domestic dogs from a rural community in Panama. Memórias do Instituto Oswaldo Cruz, Rio de Janeiro 110(7): 936-944. Link
Salinas et al. 2015. An individual-based model for feral hogs in Great Smoky Mountains National Park. Natural Resource Modeling 28 (1): 18-36. Link
Schank JC. 2015. The evolution and function of play. Adaptive Behavior 23: 329-330. Link
Schneider et al. 2015. Leptospirosis in Rio Grande do Sul, Brazil: An ecosystem approach in the animal-human interface. PLOS Neglected Tropical Diseases 9(11): e0004095. Link
Schukken et al. 2015. Longitudinal data collection of Mycobacterium avium subspecies Paratuberculosis infections in dairy herds: The value of precise field data. Special Issue of Veterinary Research 46:65. Link
Sgouralis I, Layton AT. 2015. Mathematical modeling of renal hemodynamics in physiology and pathophysiology. Mathematical Biosciences 264: 8-20. Link
Sgouralis I, Layton AT. 2015. Modeling blood flow and oxygenation in a diabetic rat kidney. AWM proceedings for NIMBioS WS for Women in Mathematical Biology.
Showa S, Nyabadza F, Hove-Musekwa SD, Magombedze G. 2015. Exploring the benefits of antibody immune response in HIV-1 infection using a discrete model. Mathematical Medicine and Biology. Link
Smith JE, Estrada JR, Richards HR, Dawes SE, Mitsos K, Holekamp KE. 2015. Collective movements, leadership and consensus costs at reunions in spotted hyaenas. Animal Behaviour 105: 187-200.
Smuts B, Bauer E, Ward C. 2015. Rollovers during play: Complementary perspectives. Behavioural Processes 116: 50-52. Link
Solis-Lemus C, Knowles LL, Ane C. 2015. Bayesian species delimitation combining multiple genes and traits in a unified framework. Evolution 69(2): 492-507. Link
Spencer M. 2015. Size change, shape change, and the growth space of a community. Journal of Theoretical Biology 369: 23-41. Link
Springborn et al. 2015. Integrating invasion and disease in the risk assessment of live bird trade. Diversity and Distributions 21(1): 101-110. Link
Springborn M, Chowell G, MacLachlan M, Fenichel EP. 2015. Accounting for behavioral responses during a flu epidemic using home television viewing. BioMed Central 15:21. Link
Sturner K, Lucci K. 2015. The difference that data make: Examining bird migration data to build scientific skill. American Biology Teacher (Univ. of California Press) 77(1): 56-61. Link
Teboh-Ewungkem M, Prosper O, Gurski K, Manore C, Peace A, Feng Z. 2015. Intermittent preventive treatment (IPT) and the spread of drug resistant malaria. The IMA Volumes in Mathematics and Its Applications.
Teufel AI, Masel J, and Liberles DA. 2015. What fraction of duplicates observed in recently sequenced genomes is segregating and destined to fail to fix?. Genome Biology and Evolution 7(8): 2258-2264. Link
Tranmer M, Marcum CS, Morton B, Croft D, de Kort S. 2015. Using the Relational Event Model (REM) to investigate the temporal dynamics of animal social networks. Animal Behaviour 101: 99-105. Link
Tsiligaridis J. 2015. MSA and Clustering with Dot Matrices, Entropy and Genetic Algorithms. In Big Data : Algorithms, Analytics, and Applications, CRC Press, Taylor & Francis Group.
Van Wassenbergh S, Day SW, Hernandez LP, Higham TE, Skorczewski T. 2015. Suction power output and the inertial cost of rotating the neurocranium to generate suction in fish. Journal of Theoretical Biology 372(2015): 159-167. Link
Wainwright PC, McGee MD, Longo SJ, Hernandez JP. 2015. Origins, innovations, and diversification of suction feeding in vertebrates. Integrative and Comparative Biology 55(1): 134-145. Link
Weitz et al. 2015. A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes. The ISME Journal 9(6): 1352-1364. Link
Whitehead H, James R. 2015. Generalized affiliation indices extract affiliations from social network data. Methods in Ecology and Evolution 6(7): 836-844. Link
Wommack KE, Nasko DJ, Chopyk J, Sakowski EG. 2015. Counts and sequences, observations that continue to change our understanding of viruses in nature. Journal of Microbiology 53(3): 181-192. Link
Yamamichi M, Meunier CL, Peace A, Prater C, Rua MA. 2015. Rapid evolution of a consumer stoichiometric trait destabilizes consumer-producer dynamics. Oikos 124(7): 960-969. Link
Zefferman M, Mathew S. 2015. An evolutionary theory of large-scale human warfare: Group-structured cultural selection. Evolutionary Anthropology 24(2): 50-61. Link
Zefferman MR, Mathew S. 2015. A theory of human warfare: Group-structured cultural selection. Evolutionary Anthropology 24(2): 50-56. Link
Zenni RD, Hoban SM. 2015. Loci under selection during multiple range expansions of an invasive plant are mostly population specific, but patterns are associated with climate. Molecular Ecology. Link
Zhu S, Degnan JH, Eldon B. 2015. Hybrid-Lambda: Simulation of multiple merger and Kingman gene genealogies in species networks and species trees. Systematic Biology 6: 292.
Zia A, Hammond Wagner C. 2015. Mainstreaming early warning systems in development and planning processes: Multilevel implementation of Sendai Framework in Indus and Sahel. International Journal of Disaster Risk Science 6 (2):189-199. Link

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Publications 2014 Online
Aguilar-Bonavides C, Cruz-Cano R, Lanzas C. 2014. Prediction and rule extraction of major histocompatibility complex class II epitopes by logic minimization. Proceedings of the 14th International Conference on Bioinformatics and Computational Biology 167-173.
Aguilar-Bonavides C, Sanchez-Arias R, Lanzas C. 2014. Accurate prediction of major histocompatibility complex class II epitopes by sparse representation via l(1)-minimization. BioData Mining 7:23. Link
Allen EJ. 2014. Derivation and computation of discrete-delay and continuous-delay SDEs in mathematical biology. Mathematical Biosciences and Engineering 11(3): 403. Link
Almeida-Filho et al. 2014. An investigation of Hebbian phase sequences as assembly graphs. Front Neural Circuits 8:34. Link
Alonso LM, Proekt A, Schwartz TH, Pryor KO, Cecchi GA, Magnasco MO. 2014. Dynamical criticality during induction of anesthesia in human ECoG recordings. Frontiers in Neural Circuits. Link
Ankrah et al. 2014. Phage infection of an environmentally relevant marine bacterium alters host metabolism and lysate composition. The ISME Journal 8: 1089-1100. Link
Bao L et al. 2014. Computational and statistical analyses of insertional polymorphic endogenous retroviruses in a non-model organism. Computation 2(4): 221-245. Link
Beaulieu JM, O'Meara BC. 2014. Hidden Markov models for studying the evolution of binary morphological character. In: Garamszegi LZ (Ed.), Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology - Concepts and Practice.
Beaulieu JM, O'Meara BC. 2014. Modeling stabilising selection: The attraction of Ornstein-Uhlenbeck models. In: Garamszegi LZ (Ed.), Modern Phylogenetic Comparative Methods and Their Application in Evolutionary Biology - Concepts and Practice.
Bell TM, Strand AE, Sotka EE. 2014. The adaptive cline at LDH (lactate dehydrogenase) in killifish Fundulus heteroclitus remains stationary after 40 years of warming estuaries. Journal of Heredity 105(4): 566-571. Link
Berec L, Maxin D. 2014. Why have parasites promoting mating success been observed so rarely?. Journal of Theoretical Biology 342: 47-61. Link
Bewick S, Chisholm RA, Akcay E, Godsoe W. 2014. A stochastic biodiversity model with overlapping niche structure. Theoretical Ecology 8(1): 81-109. Link
Bewick S, Stuble KL, Lessard JP, Dunn RR, Adler FR, Sanders NJ. 2014. Predicting future coexistence in a North American ant community. Ecology and Evolution 4(10): 1804-1819. Link
Bishop PR, Huck SQ, Ownley BH, Richards JK, Skolits GJ. 2014. Impacts of an interdisciplinary research center on participant publication and collaboration patterns: A case study of the National Institute for Mathematical and Biological Synthesis. Research Evaluation. Link
Blayneh KW, Mohammed-Awel J. 2014. Insecticide-resistant mosquitoes and malaria control. Mathematical Biosciences 252: 14-26. Link
Blumberg S, Funk S, Pulliam JRC. 2014. Detecting differential transmissibilities that affect the size of self-limited outbreaks. PLoS Pathogens 10(10): e1004452. Link
Bodine EN, Lenhart S, Gross L. 2014. Mathematics for the Life Sciences. Princeton, NJ: Princeton Press. Link
Boete C, Agusto FB, Reeves RG. 2014. Impact of mating behaviour on the success of malaria control through a single inundative release of transgenic mosquitoes. Journal of Theoretical Biology 347: 33-43. Link
Bonito et al. 2014. Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants. Molecular Ecology 23(13): 3356-3370. Link
Buchan A, LeCleir GR, Gulvik CA, Gonzalez JM. 2014. Master recyclers: Features and functions of bacteria associated with phytoplankton blooms. Nature Reviews Microbiology 12: 686-698. Link
Camacho ET, Melara LA, Villalobos MC, Wirkus S. 2014. Optimal control in the treatment of Retinitis Pigmentosa. Bulletin of Mathematical Biology 76(2). Link
Caughlin et al. 2014. Loss of animal seed dispersal increases extinction risk in a tropical tree species due to pervasive negative density dependence across life stages. Proceedings of the Royal Society B: Biological Sciences 282(1798): 20142095. Link
Chary M, Kaplan E. 2014. Synchrony can destabilize reward-sensitive networks. Frontiers in Neural Circuits. Link
Chen S, White BJ, Sanderson MW, Amrine DE, Ilany A, Lanzas C. 2014. Highly dynamic animal contact network and implications on disease transmission. Scientific Reports 4: 4472. Link
Chen-Charpentier B, Leite MCA. 2014. A model for coupling fire and insect outbreak in forests. Ecological Modeling 286: 26-36. Link
Cornwell et al. 2014. Functional distinctiveness of major plant lineages. Journal of Ecology 102(2): 345-356. Link
DeGiorgio M, Degnan JH. 2014. Robustness to divergence time underestimation when inferring species trees from estimated gene trees. Systematic Biology 63(1): 66-82. Link
Demartsev et al. 2014. Male hyraxes increase song complexity and duration in the presence of alert individuals. Behavioral Ecology 25(6): 1451-1458. Link
Dhurandhar EJ et al. 2014. Predicting adult weight change in the real world: A systematic review and meta-analysis accounting for compensatory changes in energy intake or expenditure. International Journal of Obesity. Link
Dhurandhar et al. 2014. Energy balance measurement: When something is not better than nothing. International Journal of Obesity. Link
Ding W, Hendon RC, Cathey B, Lancaster E, Germick R. 2014. Discrete Time Optimal Control Applied to Pest Control Problems. Involve, a Journal of Mathematics 7(4): 479.
Donahue K. 2014. Why ontogeny matters during adaptation: Developmental niche construction and pleiotorpy across the life cycle in Arabidopsis thaliana. Evolution 68(1): 32-47. Link
Dorazio RM, Connor EF. 2014. Estimating abundances of interacting species using morphological traits, foraging guilds, and habitat. PLoS ONE 9(4): e94323. Link
Duncan SI, Lenhart S, Sturner KK. 2014. Activities for students: Measuring Biodiversity with probability. Mathematics Teacher 107(7): 547-552.
Earl JE, Castello PO, Cohagen KE, Semlitsch RD. 2014. Effects of subsidy quality on reciprocal subsidies: How leaf litter species changes frog biomass export. Oecologia 175(1): 209-218. Link
Earl JE, Gray MJ. 2014. Introduction of ranavirus to isolated wood frog populations could cause local extinction. Ecohealth 11(4): 581-592. Link
Earl JE, Zollner PA. 2014. Effects of animal movement strategies and costs on the distribution of active subsidies across simple landscapes. Ecological Modelling 283(10): 45-52. Link
Fedosov DA, Gompper G. 2014. White blood cell margination in microcirculation. Soft Matter 10: 2961-2970. Link
Ferrer-i-Cancho R. 2014. Optimization models of natural communication. Physics and Society, arXiv:1412.2486. Link
Ganusov VV, Auerbach J. 2014. Mathematical modeling reveals kinetics of lymphocyte recirculation in the whole organism. PLoS Computational Biology 10(5): e1003586. Link
Gaoue OG, Lemes MR, Ticktin T, Sinsin B, Eyog-Matig O. 2014. Non-timber forest product harvest does not affect the genetic diversity of a tropical tree despite negative effects on population fitness. Biotropica 46(6): 756-762. Link
Gavin et al. 2014. Climate refugia: Joint inference from fossil records, species distribution models and phylogeography. New Phytologist 204(1): 37-54. Link
Gavin et al. 2014. Climate refugia: Joint inference from fossil records, species distribution models and phylogeography. New Phytologist 204(1): 37–54. Link
Gavrilets S, Fortunato L. 2014. A solution to the collective action problem in between-group conflict with within-group inequality. Nature Communications 5: 3526. Link
Gavrilets S. 2014. Is sexual conflict an "engine of speciation"?. Cold Spring Harbor Perspectives in Biology 6(12). Link
Gavrilets S. 2014. Models of speciation: Where are we now?. Journal of Heredity 105: 743-755. Link
Gervini D, Carter PA. 2014. Warped functional analysis of variance. Biometrics 70(3): 526-535. Link
Ghosh-Dastidar U, Fiorini E, Lora SM. 2014. Connectance, robustness, and the Hudson River food web. BAASANA International conference Proceedings.
Gibbs DC, Donohue K. 2014. Gene duplication and the environmental regulation of physiology and development. Ecology and Evolution 4(11): 2202-2216. Link
Godsoe W. 2014. Inferring the similarity of species distributions using Species' Distribution Models. Ecography 37(2): 130-136. Link
Gonzalez-Forero M. 2014. An evolutionary resolution of manipulation conflict. Evolution 68(7): 2038-2051. Link
Gorecki P, Eulenstein O. 2014. DrML: Probabilistic modeling of gene duplications. Journal of Computational Biology 21(1): 89-98. Link
Gorecki P, Eulenstein O. 2014. Maximizing deep coalescence cost. IEEE-ACM Transactions on Computational Biology and Bioinformatics 11(1): 231-242. Link
Gotteland C, McFerris B, Gilot-Fromont E, Zhao X, Lelu M. 2014. Agricultural landscape and spatial distribution of Toxoplasma gondii in rural environment: An agent-based model. International Journal of Health Geographics 13: 45. Link
Grear DA, Kaneene JB, Averill JJ, Webb CT. 2014. Local cattle movements in response to ongoing bovine tuberculosis zonation and regulations in Michigan, USA. Preventive Veterinary Medicine 114(3-4): 201-212. Link
Gurarie D, King CH. 2014. Population biology of schistosoma mating, aggregation, and transmission breakpoints: More reliable model analysis for the end-game in communities at risk. PLoS ONE 9(12): e115875. Link
Herman JJ, Spencer HG, Donohue K, Sultan SE. 2014. How stable 'should' epigenetic modifications be? Insights from adaptive plasticity and bet hedging. Evolution 68(3): 632-643. Link
Hill et al. 2014. Surveillance of feral swine for Trichinella spp. and Toxoplasma gondii in the USA and host-related factors associated with infection. Veterinary Parasitology 205(3-4): 653-665. Link
Hoban et al. 2014. Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion. Evolutionary Applications 7(9): 984-998. Link
Hoban S, Schlarbaum S. 2014. Optimal sampling of seeds from plant populations for ex-situ conservation of genetic biodiversity, considering realistic population structure. Biological Conservation 177: 90-99. Link
Hoban S. 2014. An overview of the utility of population simulation software in molecular ecology. Molecular Ecology 23(10): 2383-2401. Link
Hoban SM, McCleary TS, Schlarbaum SE, Romero-Severson J. 2014. Spatial genetic structure in 21 populations of butternut, a temperate forest tree (Juglans cinerea L.), is correlated to spatial arrangement, habitat, and land-use history. Forest Ecology and Management 314: 50-58. Link
Hobson EA, Avery ML, Wright TF. 2014. The socioecology of Monk Parakeets: Insights into parrot social complexity. AUK 131(4): 756-775. Link
Hrynkiv V, Koshkin S. 2014. Invasion waves in the presence of a mutualist. Mathematical Methods in the Applied Sciences 37(15): 2185–2197. Link
Iacona GD. 2014. The economic costs and ecological benefits of protected areas. University of Tennessee, Knoxville.
Jhwueng DC, Huzurbazar S, O'Meara BC, Liu L. 2014. Investigating the performance of AIC in selecting phylogenetic models. Statistical Applications in Genetics and Molecular Biology 13(4): 459-475. Link
Jhwueng DC, Maroulas V. 2014. Phylogenetic Ornstein-Uhlenbeck regression curves. Statistics and Probability Letters 89: 110-117. Link
Jiang et al. 2014. Bistability of mangrove forests and competition with freshwater plants. Agricultural and Forest Meteorology 213: 283-290. Link
Jiang J, DeAngelis DL, Anderson GH, Smith TJ. 2014. Analysis and simulation of propagule dispersal and salinity intrusion from storm surge on the movement of a marsh-mangrove ecotone in south Florida. Estruaries and Coasts 37(1): 24-35.
Jiang J, DeAngelis DL, Zhang B, Cohen JE. 2014. Population age and initial density in a patchy environment affect the occurrence of abrupt transitions in a birth-and-death model of Taylor's law. Ecological Modelling 289: 59-65. Link
Jover LF, Effler TC, Buchan A, Wilhelm SW, Weitz JS. 2014. The elemental composition of virus particles: Implications for marine biogeochemical cycles. Nature Reviews Microbiology 12(7): 519-528. Link
Kamangira B, Nyamugure P, Magombedze G. 2014. A theoretical mathematical assessment of the effectiveness of coartemether in the treatment of Plasmodium falciparum malaria infection. Mathematical Biosciences 256: 28-41. Link
Karpinets TV, Park BH, Syed MH, Klotz MG, Uberbacher EC. 2014. Metabolic environments and genomic features associated with pathogenic and mutualistic interactions between bacteria and plants. Molecular Plant-Microbe Interactions 27(7): 664-677. Link
Kershenbaum A, Bowles A, Freeburg T, J Dezhe, Lameira A, Bohn K. 2014. Animal vocal sequences: Not the Markov chains we thought they were. Proceedings of the Royal Society B: Biological Sciences 281(1792): 20141370. Link
Kershenbaum A. 2014. Entropy rate as a measure of animal vocal complexity. Bioacoustics 23(3): 195-208. Link
Kershenbaum et al. 2014. Acoustic sequences in non-human animals: A tutorial review and prospectus. Biological Reviews 91(1): 13-52. Link
Kershenbaum et al. 2014. Exploration of preterm birth rates using the Public Health Exposome Database and computational analysis methods. International Journal of Environmental Research and Public Health 11(12): 12346-12366. Link
Kershenbaum et al. 2014. Landscape influences on dispersal behaviour: A theoretical model and empirical test using the fire salamander, Salamandra infraimmaculata. Oecologia 175(2): 509-520. Link
Kroetz K, Sanchirico JN, Armsworth PR, Banzhaf HS. 2014. Benefits of the ballot box for species conservation. Ecology Letters 17(3). Link
Lawing AM, Matzke NJ. 2014. Conservation paleobiology needs phylogenetic methods. Ecography 37(11): 1109-1122. Link
Leander R, Allen EJ, Garbett SP, Tyson DR, Quaranta V. 2014. Derivation and experimental comparison of cell-division probability densities. Journal of Theoretical Biology 359: 129. Link
Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. 2014. Cone size is related to branching architecture in conifers. New Phytologist 203(4): 1119-1127. Link
Li XJ, Peng ZL, Lei H, Dao M, Karniadakis, GE. 2014. Probing red blood cell mechanics, rheology and dynamics with a two-component multiscale model. Philosophical Transactions A 372: 20130389. Link
Ma et al. 2014. A phylogenetic model for understanding the effect of gene duplication on cancer progression. Nucleic Acids Research 42: 2870-2878. Link
Mack KML, Bever JD. 2014. Coexistence and relative abundance in plant communities are determined by feedbacks when the scale of feedback and dispersal is local. Journal of Ecology 102(5): 1195-1201. Link
Magombedze G, Eda S, Ganusov VV. 2014. Competition for antigen between Th1 and Th2 responses determines the timing of the immune response switch during Mycobaterium avium subspecies paratuberulosis infection in ruminants. PLoS Computational Biology 10(1): e1003414. Link
Matzke NJ, Shih PM, Kerfeld CA. 2014. Bayesian analysis of congruence of core genes in Prochlorococcus and Synechococcus and implications on horizontal gene transfer. PLoS One 9(1): e85103. Link
Matzke NJ. 2014. Model selection in historical biogeography reveals that founder-event speciation is a crucial process in island clades. Systematic Biology 63(6): 951-970. Link
McAlarnen L, Smith K, Brownstein JS, Jerde C. 2014. Internet and free press are associated with reduced lags in global outbreak reporting. PLoS Currents Outbreaks. Link
McBridea et al. 2014. Spectral and complexity analysis of scalp EEG characteristics for mild cognitive impairment and early Alzheimer's disease. Computer Methods and Programs in Biomedicine 114(2): 153-163. Link
Mesterton-Gibbons M, Heap SM. 2014. Variation between self- and mutual assessment in animal contests. The American Naturalist 183(2): 199-213. Link
Mesterton-Gibbons M, Karabiyik T, Sherratt TN. 2014. The iterated Hawk-Dove game revisited: The effect of ownership uncertainty on Bourgeois as a pure convention. Dynamic Games and Application 4(4): 407-431. Link
Mesterton-Gibbons M, Sherratt TN. 2014. Bourgeois versus anti-Bourgeois: A model of infinite regress. Animal Behaviour 89: 171-183. Link
Miller et al. 2014. Simulating free-roaming cat population management options in open demographic environments. PLoS ONE 9(11). Link
Ngonghala CN, Del Valle SY, Zhao R, Mohammed-Awel J. 2014. Quantifying the impact of decay in bed-net efficacy on malaria transmission. Journal of Theoretical Biology 363(21): 247-261. Link
Ngonghala CN, Teboh-Ewungkem MI, Ngwa GA. 2014. Persistent oscillations and backward bifurcation in a malaria model with varying human and mosquito populations: Implications for control. Journal of Mathematical Biology 70(7): 1581-1622. Link
Ngonghala et al. 2014. Poverty, disease, and the ecology of complex systems. PLoS Biology 12(4): e1001827. Link
Ngwa et al. 2014. On a reproductive stage-structured model for the population dynamics of the malaria vector. Bulletin of Mathematical Biology 76(10): 2476-2516. Link
Numfor E, Bhattacharya S, Lenhart S, Martcheva M. 2014. Optimal control in coupled within-host and between-host models. Mathematical Modelling of Natural Phenomena 9(4): 171-203.
Oremland M, Laubenbacher R. 2014. Using difference equations to find optimal tax structures on the SugarScape. Journal of Economic Interaction and Coordination 9(2): 233-253.
Palagi E, Norscia I, Spada G. 2014. Relaxed open mouth as a playful signal in wild ring-tailed lemurs. American Journal of Primatology 76(11): 1074-1083. Link
Patel et al. 2014. Experimental observation of extreme multistability in an electronic system of two coupled Rossler oscillators. BioPortfolio 89(2): 022918. Link
Rabier CE, Ta T, Ane C. 2014. Detecting and locating whole genome duplications on a phylogeny: A probabilistic approach. Molecular Biology and Evolution 31(3): 750-762. Link
Remien CH, Sussman NL, Adler FR. 2014. Mathematical modelling of chronic acetaminophen metabolism and liver injury. Mathematical Medicine and Biology 31(3): 302-317. Link
Remien et al. 2014. Deconvolution of isotope signals from bundles of multiple hairs. Oecologia 175(3): 781-789. Link
Roesti M, Gavrilets S, Hendry AP, Salzburger W, Berner D. 2014. The genomic signature of parallel adaptation from shared genetic variation. Molecular Ecology 23(16): 3944-3956. Link
Shimada M, Sueur C. 2014. The importance of social play networks for wild chimpanzees at Mahale Mountains National Park, Tanzania. American Journal of Primatology 76: 1025. Link
Showa SP, Nyabadza F, Hove-Musekwa SD, Magombedze G. 2014. A comparison of elasticities of viral levels to specific immune response mechanisms in human immunodeficiency virus infection. BMC Research Notes 7:737. Link
Smuts B. 2014. Social behavior among companion dogs with an emphasis on play. In J Kaminsky, S Marshall-Pescini (eds.), The Social Dog, Elsevier Inc., pp. 105-130.
Stevenson RD, Klemow KM, Gross LJ. 2014. Harnessing bits and bytes to transform ecology education. Frontiers in Ecology and the Environment 12: 306–307. Link
Sussman NL, Remien CH, Kanwal F. 2014. The end of Hepatitis C. Clinical Gastroenterology and Hepatology 12(4): 533-536. Link
Swedlund A, Sattenspiel L, Warren A, Gumerman G. 2014. Modelling archaeology: 20 years after Artificial Anasazi. In Wurzer G, Kowarik K, Reschreiter H (eds) Agent-based Modelling and Archaeology, Springer, pp. 37-50.
Teboh-Ewungkem MI, Mohammed-Awel J, Baliraine FN, Duke-Sylvester SM. 2014. The effect of intermittent preventive treatment on anti-malarial drug resistance spread in areas with population movement. Malaria Journal 13: 428. Link
Teufel AI, Zhao J, O'Reilly M, Liu L, Liberles DA. 2014. On mechanistic modeling of gene content evolution: Birth-death models and mechanisms of gene birth and gene retention. Computation 2(3): 112-130. Link
Thomas et al. 2014. Dynamic model predicting overweight, obesity, and extreme obesity prevalence trends. Obesity 22(2): 590-597. Link
Tsao et al. 2014. Sources of bovine tuberculosis in the United States. Infection, Genetics and Evolution 28: 137-143. Link
Turchin P, Currie T, Turner EAL, Gavrilets S. 2014. Reply to Thomas: Diffusion of military technologies is a plausible explanation for the evolution of social complexity 1500 BCE-AD 1500. Proceedings of the National Academy of Sciences 111(4): E415. Link
Velazquez J, Garrahan JP, Eichhorn MP. 2014. Spatial complementarity and the coexistence of species. PLoS ONE 9(12): e114979. Link
Wallace DI, Southworth BS, Shi X, Chipman JW, Githeko AK. 2014. A comparison of five malaria transmission models: Benchmark tests and implications for disease control. Malaria Journal 13: 268. Link
Woods et al. 2014. Directional collective cell migration emerges as a property of cell interactions. PloS ONE 9(9): e104969. Link
Yanik B, Lenhart S, Sturner K. 2014. Get involved in outreach! AWM Newsletter 44(2): 21-22. Link
Yee SH, Carriger JF, Bradley P, Fisher WS, Dyson B. 2014. Developing scientific information to support decisions for sustainable coral reef ecosystem services. Ecological Economics. Link
Yee SH, Dittmar JA, Oliver LM. 2014. Comparison of methods for quantifying reef ecosystem services: A case study mapping services for St. Croix, USVI. Ecosystem Services 8: 1-15. Link
Zanne et al. 2014. Three keys to the radiation of angiosperms into freezing environments. Nature 506(7486). Link
Zefferman MR. 2014. Direct reciprocity under uncertainty does not explain one-shot cooperation, but demonstrates the benefits of a norm psychology. Evolution and Human Behavior 35(5): 358-367. Link
Zhao R, Mohammed-Awel J. 2014. A mathematical model studying mosquito-stage transmission-blocking vaccines. Mathematical Biosciences and Engineering 11(5): 1229-1245. Link

   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Publications 2013 Online
Agusto et al. 2013. The impact of bed-net use on malaria prevalence. Journal of Theoretical Biology 320(7): 58-65. Link
Agusto F, Lenhart S. 2013. Optimal control of the spread of malaria superinfectivity. Journal of Biological Systems 21(4): 1340002. Link
Agusto FB, Gumel AB. 2013. Qualitative dynamics of lowly- and highly-pathogenic avian influenza strains. Mathematical Biosciences 243(2): 147-162. Link
Allman ES, Degnan JH, Rhodes JA. 2013. Species tree inference by the STAR method and its generalizations. Journal of Computational Biology 20(1): 50-61. Link
Barton BH, Moran E. 2013. Measuring diversity on the Supreme Court with biodiversity statistics. Journal of Empirical Legal Studies 10(1): 1-34. Link
Beaulieu JM, O'Meara BC, Donoghue MJ. 2013. Identifying hidden rate changes in the evolution of a binary morphological character: The evolution of plant habit in campanulid angiosperms. Systems Biology 62(5): 725-737. Link
Beaulieu JM, Tank DC, Donoghue MJ. 2013. A Southern Hemisphere origin for campanulid angiosperms, with traces of the break-up of Gondwana. BMC Evolutionary Biology 13: 80. Link
Bechette et al. 2013. Mathematical modeling of bacteria-virus interactions in Lake Michigan incorporating phosphorus content. Journal of Great Lakes Research 39(4): 646-654. Link
Berec L, Maxin D. 2013. Fatal or harmless: Extreme bistability induced by sterilizing, sexually transmitted pathogens. Bulletin of Mathematical Biology 75(2): 258-273. Link
Berg CL, Chow JS, Mcgee MD, Wainwright PC. 2013. Divergent feeding kinematics in two Amazonian cichlids. Integrative and Comparative Biology, 53(S1): E246.
Bewick S, Chisholm R, Akcay E, Godsoe W. Submitted 2013. Effects of niche overlap on patterns of biodiversity in a stochastic community model. Ecology Letters.
Blankenship T, Tisdale C, Yang Y. Submitted 2013. Statistical tracking of fast movements of organelles. Involve, A Journal of Mathematics.
Bolnick DI, Otto SP. 2013. The magnitude of local adaptation under genotype-dependent dispersal. Ecology and Evolution 3(14): 4722-4735. Link
Borstein SR, Mcgee MD, Wainwright PC. 2013. Mouthbrooding does not constrain craniofacial diversity in Lake Tanganyika cichlids. Integrative and Comparative Biology 53(1): E251.
Bossu CM, Beaulieu JM, Ceas PA, Near TJ. 2013. Explicit tests of palaeodrainage connections of southeastern North America and the historical biogeography of Orangethroat Darters (Percidae: Etheostoma: Ceasia). Molecular Ecology 22(21): 5397-5417. Link
Bravo R, Axelrod D. 2013. A calibrated agent-based computer model of stochastic cell dynamics in normal human colon crypts useful for in silico experiments. Theoretical Biology and Medical Modelling 10: 66. Link
Buhnerkempe et al. 2013. A national-scale picture of US cattle movements obtained from Interstate Certificate of Veterinary Inspection data. Preventive Veterinary Medicine 112(3-4): 318-329. Link
Carstens BC, Satler JD, Jordan, D. 2013. The carnivorous plant described as Sarracenia alata contains two cryptic species. Biological Journal of the Linnean Society 109(4): 737-746. Link
Chaffee DW, Griffin H, Gilman RT. 2013. SEXUAL IMPRINTING: WHAT STRATEGIES SHOULD WE EXPECT TO SEE IN NATURE?. Evolution 67(12): 3588-3599. Link
Chen S, Sanderson M, Lanzas C. 2013. Investigating effects of between- and within-host variability on Escherichia coli 0157 shedding pattern and transmission. Preventive Veterinary Medicine 109(1-2): 47-57. Link
Chen S, Sanderson MW, White BJ, Amrine DE, Lanzas C. 2013. Temporal-spatial heterogeneity in animal-environment contact: Implications for the exposure and transmission of pathogens. Scientific Reports 3: 3112. Link
Cho E. 2013. Algorithm for finding maximal frequent sets. International Journal of Pure and Applied Mathematics 83(2). Link
Chow JS, Berg CL, Hymes M, Mcgee MD, Wainwright PC. 2013. Convergent feeding kinematics in elongate cichlids. Integrative and Comparative Biology 53(S1).
Chu Y, Li G, Guo H. 2013. QM/MM MD and free energy simulations of the methylation reactions catalyzed by protein arginine methyltransferase PRMT3. Canadian Journal of Chemistry - Revue Canadienne de Chimie 91(7): 605-612. Link
Collar DC, Mehta RS, Holzman R, Wainwright PC. 2013. The morphological and kinematic basis of suction feeding performance evolution. Integrative and Comparative Biology 53(S1): E37.
Collins C, Shen J, Wise SM. 2013. An efficient, energy stable scheme for the Cahn-Hilliard-Brinkman system. Communications in Computational Physics 13(4): 929-957. Link
Connor EF, Collins MD, Simberloff D. 2013. The checkered history of checkerboard distributions. Ecology 94(11): 2403-2414. Link
Cordoni G, Palagi E. 2013. Smiling and primate play faces: Origins and functions. Human Evolution 28: 1-12.
Cressman R, Krivan V. 2013. Two-patch population models with adaptive dispersal: The effects of varying dispersal speeds. Journal of Mathematical Biology 67(2): 329-358. Link
Dall'Olio S. 2013. PhD dissertation. Universita di Firenze, Firenze, Italy.
de Waal FBM, Gavrilets S. 2013. Monogamy with a purpose. Proceedings of the National Academy of Sciences 110(38): 15167-15168. Link
DeAngelis D. 2013. The case for ratio dependence in trophic ecology. Trends in Ecology & Evolution 28(5): 259-260. Link
DeAngelis DL. 2013. Intraspecific trait variation and its effects on food chains. Mathematical Biosciences 244(2): 91-97. Link
Degnan JH. 2013. Anomalous unrooted gene trees. Systematic Biology 62(4): 574-590. Link
Earl JE, Semlitsch RD. 2013. Carryover effects in amphibians: Are characteristics of the larval habitat needed to predict juvenile survival?. Ecological Applications 23(6): 1429-1442. Link
Earl JE, Semlitsch RD. 2013. Spatial subsidies, trophic state, and community structure: Examining the effects of leaf litter input on ponds. Ecosystems 16(4): 639-651. Link
Federico P, Gross LJ, Lenhart S, Ryan D. 2013. Optimal control in individual-based models: Implications from aggregated methods. The American Naturalist 181(1): 64-77. Link
Feng ZL, Velasco-Hernandez J, Tapia-Santos B. 2013. A mathematical model for coupling within-host and between-host dynamics in an environmentally-driven infectious disease. Mathematical Biosciences 241(1): 49-55. Link
Funk S, Nishiura H, Heesterbeek H, Edmunds WJ, Checchi F. 2013. Identifying transmission cycles at the human-animal interface: The role of animal reservoirs in maintaining gambiense human African trypanosomiasis. PLoS Computational Biology 9(1): e1002855. Link
Ganusov VV, De Boer RJ. 2013. A mechanistic model for bromodeoxyuridine dilution naturally explains labelling data of self-renewing T cell populations. Journal of the Royal Society Interface 10(78): 20120617. Link
Gaoue OG, Horvitz CC, Ticktin T, Steiner UK, Tuljapurkar S. 2013. Defoliation and bark harvesting affect life-history traits of a tropical tree. Journal of Ecology 101(6): 1563-1571. Link
Gaydos et al. 2013. Visualizing genetic constraints. Annals of Applied Statistics 7(2): 860-882. Link
Gil et al. Submitted 2013. Dengue dynamics in the 2009 outbreak in Oran, north of Argentina: Space-time analysis.
Godsoe W, Larson MA, Glennon KL, Segraves KA. 2013. Polyploidization in Heuchera cylindrica (Saxifragaceae) did not result in a shift in climatic requirements. American Journal of Botany 100(3): 496-508. Link
Gonzalez-Forero M, Gavrilets S. 2013. Evolution of manipulated behavior. The American Naturalist 182(4): 439-451. Link
Gorecki P, Eulenstein O, Tiuryn J. 2013. Unrooted tree reconciliation: A unified approach. IEEE-ACM Transactions on Computational Biology and Bioinformatics 10(2): 522-536. Link
Gross L. 2013. Selective ignorance and multiple scales in biology: Deciding on criteria for model utility. Biological Theory 8(1): 74-79. Link
Gross L. 2013. Use of computer systems and models. In: Levin SA (ed.), Encyclopedia of Biodiversity, Second Edition, Vol. 2, pp. 213-220. Waltham, MA: Academic Press.
Grunloh NR. 2013. Senior Thesis: A stochastic dynamic model of the behavioral ecology of play. University of California, Santa Cruz, CA.
Hay et al. 2013. Global mapping of infectious disease. Philosophical Transactions of The Royal Society B: Biological Sciences 368(1614): 20120250. Link
Haynes KJ, Bjornstad ON, Allstadt AJ, Liebhold AM. 2013. Geographical variation in the spatial synchrony of a forest-defoliating insect: Isolation of environmental and spatial drivers. roceedings of the Royal Society B: Biological Sciences 280(1753): 20122373. Link
Hoban et al. 2013. Conservation genetic resources for effective species survival (ConGRESS): Bridging the divide between conservation research and practice. Journal for Nature Conservation 21(6): 433-437. Link
Hoban et al. 2013. High variance in reproductive success generates a false signature of a genetic bottleneck in populations of constant size: A simulation study. BMC Bioinformatics 14: 1309.
Hughes JS. 2013. Dissertation: Patterns and processes in forest insects population dynamics. University of Toronto.
Ilany A, Barocas A, Kam M, Ilany T, Geffen E. 2013. The energy cost of singing in wild rock hyrax males: Evidence for an index signal. Animal Behaviour 85(5): 995-1001. Link
Ilany A, Barocas A, Koren L, Kam M, Geffen E. 2013. Structural balance in the social networks of a wild mammal. Animal Behaviour 85(6): 1397-1405. Link
Ingersoll TE, Sewall BJ, Amelon S. 2013. Improved analysis of long-term monitoring data demonstrates marked regional declines of bat populations in the eastern United States. PLoS ONE 8(6): e65907. Link
Jhwueng DC. 2013. Assessing the Goodness of Fit of phylogenetic comparative methods: A meta-analysis and simulation study. PLoS ONE 8(6): e67001. Link
Jiang J, DeAngelis D. 2013. Strong species-environment feedback shapes plant community assembly along environmental gradients. Ecology and Evolution 3(12): 4119-4128. Link
Kakade V, Zhao X, Tolkacheva EG. 2013. Using dominant eigenvalue analysis to predict formation of alternans in the heart. Physical Review E 88(5): 052716. Link
Kanarek AR, Webb CT, Barfield M, Holt RD. 2013. Allee effects, aggregation, and invasion success. Theoretical Ecology 6(2): 153-164. Link
Kershenbaum A, Roch MA. 2013. An image processing based paradigm for the extraction of tonal sounds in cetacean communications. The Journal of the Acoustical Society of America 134(6): 4435-4445. Link
Kershenbaum A, Sayigh LS, Janik VM. 2013. The encoding of individual identity in dolphin signature whistles: How much information is needed?. PLoS ONE 8(10): e77671. Link
Knudsen GR, Dixon RD, Amelon SK. 2013. Potential spread of White-nose Syndrome of bats to the northwest: Epidemiological considerations. Northwest Science 87(4): 292-306. Link
Kreft et al. 2013. Mighty small: Observing and modeling individual microbes becomes big science. Proceedings of the National Academy of Sciences 110(45): 18027-18028. Link
Krivan V. 2013. Behavioral refuges and predator-prey coexistence. Journal of Theoretical Biology 339: 112-121. Link
Lameira et al. 2013. Predator guild does not influence orangutan alarm call rates and combinations. Behavioral Ecology and Sociobiology 67(3): 519-528. Link
Lapiedra O, Sol D, Carranza S, Beaulieu JM. 2013. Behavioural changes and the adaptive diversification of pigeons and doves. roceedings of the Royal Society B: Biological Sciences 280(1755): 20122893.
Laubenbacher R, Hinkelmann F, Oremland M. 2013. Agent-based models and optimal control in biology: A discrete approach. In: R. Robeva, T. Hodge (ed.), Mathematical Concepts and Methods in Modern Biology (edition 1), pp. 143-178. San Diego, CA: Elsevier. Link
Lelu M, Langlais M, Poulle ML, Gilot-Fromont E, Gandon S. 2013. When should a trophically and vertically transmitted parasite manipulate its intermediate host? The case of Toxoplasma gondii. roceedings of the Royal Society B: Biological Sciences 280(1765): 20131143. Link
Lendemer JC, Hodkinson BP. 2013. A radical shift in the taxonomy of Lepraria sl: Molecular and morphological studies shed new light on the evolution of asexuality and lichen growth form diversification. Mycologia 105(4): 994-1018. Link
Lenhart S, Bodine E, Zhong P, Joshi H. 2013. Illustrating optimal control applications with discrete and continuous features. In: Melnik R, Kotsireas IS (eds.), Advances in Applied Mathematics, Modeling, and Computational Science, Fields Institute Communications 66: 209-238. Link
Lennox GD, Armsworth PR. 2013. The ability of landowners and their cooperatives to leverage payments greater than opportunity costs from conservation contracts. Conservation Biology 27(3): 625-634. Link
Leslie AB, Beaulieu JM, Crane PR, Donoghue MJ. 2013. Explaining the distribution of breeding and dispersal syndromes in conifers. roceedings of the Royal Society B: Biological Sciences 280(1770): 20131812. Link
Liberles DA, Teufel AI, Liu L, Stadler T. 2013. On the need for mechanistic models in computational genomics. Genome Biology and Evolution 5: 2008-2018. Link
Lindstrom et al. 2013. A Bayesian approach for modeling cattle movements in the United States: Scaling up a partially observed network. PLoS ONE 8(1): e53432. Link
Lu Z, Schukken YH, Smith RL, Grohn YT. 2013. Using vaccination to prevent the invasion of Mycobacterium avium subsp paratuberculosis in dairy herds: A stochastic simulation study. Preventive Veterinary Medicine 110(3-4): 335-345. Link
Lu Z, Schukken YH, Smith RL, Mitchell RM, Grohn YT. 2013. Impact of imperfect Mycobacterium avium subsp paratuberculosis vaccines in dairy herds: A mathematical modeling approach. Preventive Veterinary Medicine 108(2-3): 148-158. Link
Magombedze G, Dowdy D, Mulder N. 2013. Latent tuberculosis: Models, computational efforts and the pathogen's regulatory mechanisms during dormancy. Frontiers in Bioengineering and Biotechnology, ISSN: 2296 4185. Link
Magombedze G, Mulder N. 2013. Understanding TB latency using computational and dynamic modelling procedures. Infection, Genetics and Evolution 13: 267-283. Link
Magombedze G, Ngonghala CN, Lanzas C. 2013. Evalution of the "Iceberg Phenomenon" in Johne's Disease through mathematical modelling. PLoS ONE 8(10): e76636. Link
Magombedze G, Reddy PBJ, Eda S, Ganusov VV. 2013. Cellular and population plasticity of helper CD4+ T cell responses. Frontiers in Physiology 4, ISSN: 1664 042X. Link
Mancini G, Ferrari PF, Palagi E. 2013. In play we trust. Rapid facial mimicry predicts the duration of playful interactions in Geladas. PLoS ONE 8(6): e66481. Link
Mancini G, Ferrari PF, Palagi E. 2013. Rapid facial mimicry in geladas. Scientific Reports 3: 1527.
Maroulas V, Xiong J. 2013. Large deviations for optimal filtering with fractional Brownian motion. Stochastic Processes and Their Applications 123(6): 2340-2352. Link
Martin RA, Garnett SC. 2013. Relatedness and resource diversity interact to influence the intensity of competition. Biological Journal of the Linnean Society 110(3): 689-695. Link
Martin RA, Langerhans RB. 2013. Piscivorous fish in a fishless environment: Dietary and phenotypic differentiation of bigmouth sleepers in Bahamas blue holes. Integrative and Comparative Biology 53(S1): E138. Link
Martin RA, Riesch R, Heinen-Kay JL, Langerhans RB. 2013. Evolution of male coloration during a post-pleistocene radiation of bahama's mosquitofish (Gambusia hubbsi). Evolution 68(2): 397-411. Link
Massaro et al. 2013. Modeling for cost analysis of Johne's disease control based on EVELISA testing. Journal of Biological Systems 21(4): 1340010. Link
Matzke NJ. 2013. Probabilistic historical biogeography: New models for founder-event speciation, imperfect detection, and fossils allow improved accuracy and model-testing. Frontiers of Biogeography 5(4): 242-248. Link
McBride J, Zhao XP, Munro N, Smith C, Jicha G, Jiang Y. 2013. Resting EEG discrimination of early stage Alzheimer's disease from normal aging using inter-channel coherence network graphs. Annals of Biomedical Engineering 41(6): 1233-1242. Link
Mesterton-Gibbons M, Sherratt TN. 2013. Signalling Victory to Ensure Dominance: A Continuous Model. In Cardaliaguet P and Cressman R (eds.), Advances in Dynamic Games, Part I 12: 25-38. Link
Meyer K, Houle D. 2013. Sampling based approximation of confidence intervals for functions of genetic covariance matrices. Proceedings from the 20th Conference of the Association for the Advancement of Animal Breeding and Genetics 20: 523-526. Link
Mieszkowska N, Milligan G, Burrows MT, Freckleton R, Spencer M. 2013. Dynamic species distribution models from categorical survey data. Journal of Animal Ecology 82(6): 1215-1226. Link
Moran EV, Bewick S, Cobbold C. 2013. Effects of plant genotype and insect dispersal rate on the population dynamics of a forest pest. Ecology 94(12): 2792-2802. Link
Moran EV, Kubiske ME. 2013. Can elevated CO2 and ozone shift the genetic composition of aspen (Populus tremuloides) stands?. New Phytologist 198(2): 466-475. Link
Morin BR, Fenichel EP, Castillo-Chavez C. 2013. SIR dynamics with economically driven contact rates. Natural Resource Modeling 26(4): 505-525. Link
Mushayabasa S, Bhunu CP, Magombedze G, Stewart AGR. 2013. On the role of screening and educational campaigns on controlling HCV in correctional institutions. Journal of Biological Systems 21(1): 1350007. Link
Noon K, Welsh CJE, Ingersoll T. 2013. Analysis of changes in wintering bird numbers using the Knoxville Christmas Bird Count as a case study. Migrant 84: 1-23.
Oremland M, Laubenbacher R. 2013. Optimization of agent-based models: Scaling methods and heuristic algorithms. Journal of Artificial Societies and Social Simulation 17(2): 6. Link
Palagi E. 2013. Playing alone and with others - A lesson from animals. In: Coplan RJ, Bowker J (eds.), A Handbook of Solitude: Psychological Perspectives on Social Isolation, Social Withdrawal, and Being Alone. Link
Panovska-Griffiths J, Page KM, Briscoe J. 2013. A gene regulatory motif that generates oscillatory or multiway switch outputs. Journal of the Royal Society Interface 10(79): 20120826. Link
Parker et al. 2013. Do invasive species perform better in their new ranges. Ecology 94: 985-994. Link
Peterman WE, Rittenhouse TAG, Earl JE, Semlitsch RD. 2013. Demographic network and multi-season occupancy modeling of Rana sylvatica reveal spatial and temporal patterns of population connectivity and persistence. Landscape Ecology 28(8): 1601-1613. Link
Pienaar J, Ilany A, Geffen E, Yom-Tov Y. 2013. Macroevolution of life-history traits in passerine birds: Adaptation and phylogenetic inertia. Ecology Letters 16(5): 571-576. Link
Plucinski MM, Ngonghala C, Getz WM, Bonds MH. 2013. Clusters of poverty and disease emerge from feedbacks on an epidemiological network. Journal of The Royal Society Interface 10(80): 20120656. Link
Portacci K, Miller R, Riggs P, Buhnerkempe M, Abrahamsen L. 2013. Assessment of paper interstate certificates of veterinary inspection used to support disease tracing in cattle. Journal of the American Veterinary Medical Assoication 243(4): 555-560. Link
Pringle EG, Akcay E, Raab TK, Dirzo R, Gordon DM. 2013. Water stress strengthens mutualism among ants, trees, and scale insects. PLoS Biology 11(11): e1001705. Link
Qin H, Driks A. 2013. Contrasting evolutionary patterns of spore coat proteins in two Bacillus species groups are linked to a difference in cellular structure. BMC Evolutionary Biology 13: 261. Link
Rannala B, Yang Z. 2013. Improved reversible jump algorithms for Bayesian species delimitation. Genetics 194(1): 245-253. Link
Rice WR, Friberg U, Gavrilets S. 2013. Homosexuality via canalized sexual development: A testing protocol for a new epigenetic model. Bioessays 35(9): 764-770. Link
Riesch R, Martin RA, Lerp H, Plath M, Wronski T. 2013. Size and sex matter: Reproductive biology and determinants of offspring survival in Gazella marica. Biological Journal of the Linnean Society 110(1): 116-127. Link
Rodder et al. 2013. Evaluating the significance of paleophylogeographic species distribution models in reconstructing Quaternary range-shifts of Nearctic chelonians. PLoS ONE 8(10): e72855. Link
Ryan D, Daley BJ, Wong K, Zhao X. 2013. Prediction of ICU in-hospital mortality using a deep Boltzmann machine and dropout neural net. Proceedings of the Biomedical Sciences and Engineering Conference (BSEC). Link
Ryan D, Papamichail D. 2013. Rational design of orthogonal libraries of protein coding genes. ACS Synthetic Biology 2(4): 237-244. Link
Shah P, Fitzpatrick BM, Fordyce JA. 2013. A parametric method for assessing diversification-rate variation in phylogenetic trees. Evolution 67(2): 368-377. Link
Sherratt T, Mesterton-Gibbons M. 2013. Models of group or multi-party contests. In: Hardy ICW, Briffa M (eds.), Animal Contests, Cambridge University Press. Link
Shimada M. 2013. Dynamics of the temporal structures of playing clusters and cliques among wild chimpanzees in Mahale Mountains National Park. Primates 54(3): 245-257. Link
Shimada M. 2013. Wild chimpanzees can perform social grooming and social play behaviors simultaneously. Primates 54(4): 315-317. Link
Signoriello A. 2013. Undergraduate Honors Thesis: Stochastic models for an antibiotic-resistant infection. Ursinus College.
Steffen et al. 2013. Development and validation of a risk score predicting substantial weight gain over 5 years in middle-aged European men and women. PLoS ONE 8(7): e67429. Link
Sturner K, Golden B, Lenhart SL. 2013. Modeling the forest. Science Scope 37(1): 70-79.
Sullivan AM, Zhao X, Suzuki Y, Ochiai E, Crutcher S, Gilchrist MA. 2013. Evidence for finely-regulated asynchronous growth of Toxoplasma gondii cysts based on data-driven model selection. PLoS Computational Biology 9(11): e1003283. Link
Sullivan AM. 2013. Dissertation: Multiscale modeling of Toxoplasma gondii. University of Tennessee, Knoxville. Link
Teboh-Ewungkem MI, Ngwa GA, Ngonghala CN. 2013. Models and proposals for malaria: A review. Mathematical Population Studies: An International Journal of Mathematical Demography 20(2): 57-81. Link
Thibert-Plante X, Gavrilets S. 2013. Evolution of mate choice and the so-called magic traits in ecological speciation. Ecology Letters 16(8): 1004-1013. Link
Turchin P, Currie TE, Turner EAL, Gavrilets S. 2013. War, space, and the evolution of Old World complex societies. Proceedings of the National Academy of Sciences 110(41): 16384-16389. Link
Turner M, Lenhart S, Rosenthal B, Zhao X. 2013. Modeling effective transmission pathways and control of the world's most successful parasite. Theoretical Population Biology 86: 50-61. Link
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van der Wal A, Tecon R, Kreft JU, Mooij WM, Leveau JHJ. 2013. Explaining bacterial dispersion on leaf surfaces with an individual-based model (PHYLLOSIM). PLoS ONE 8(10): e75633. Link
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Visweswaran R, McIntyre SD, Ramkrishnan K, Zhao XP, Tolkacheva EG. 2013. Spatiotemporal evolution and prediction of [Ca2+](i) and APD alternans in isolated rabbit hearts. Journal of Cardiovascular Electrophysiology 24(11): 1287-1295. Link
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Wang Y, Gautam R, Pinedo PJ, Allen LJS, Ivanek R. 2013. A stochastic model for transmission, extinction and outbreak of Escherichia coli O157:H7 in cattle as affected by ambient temperature and cleaning practices. Journal of Mathematical Biology, 69(2): 501-532. Link
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Xia H, Asif I, Zhao X. 2013. Cloud-ECG for real time ECG monitoring and analysis. Computer Methods and Programs in Biomedicine 110(3): 253-259. Link
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Publications 2012 Online
Agusto FB, Bewick S, Parshad RD. 2012. Mosquito management in the face of natural selection. Mathematical Biosciences 239(1): 154-168. Link
Agusto FB, Marcus N, Okosun KO. 2012. Application of optimal control to the epidemiology of malaria. Electronic Journal of Differential Equations, vol. 2012(2012, no. 81): 1-22. Link
Akcay E, Van Cleve J. 2012. Behavioral responses in structured populations pave the way to group optimality. The American Naturalist 179(2): 257-269.
Akcay E. 2012. Incentives in the family II: Behavioral dynamics and the evolution of non-costly signaling. Journal of Theoretical Biology 294(7): 9-18. Link
Allen et al. 2012. Mathematical modeling of viral zoonoses in wildlife. Natural Resource Modeling 25(1): 5-51. Link
Allen LJ, Bokil VA. 2012. Stochastic models for competing species with a shared pathogen. Mathematical Biosciences and Engineering 9(3): 461-485. Link
Arditi R, Ginzburg LR. 2012. How Species Interact: Altering the Standard View on Trophic Ecology. Oxford University Press, ISBN: 978-0-19-991383-1. Link
Balaskas et al. 2012. Gene regulatory logic for reading the Sonic Hedgehog signaling gradient in the vertebrate neural tube. Cell 148(1-2): 273-284. Link
Bani-Yaghoub M, Gautam R, Shuai Z, van den Driessche P, Ivanek R. 2012. Reproduction numbers for infections with free-living pathogens growing in the environment. Journal of Biological Dynamics 6(2): 923-940. Link
Baracos et al. 2012. Advances in the science and application of body composition measurement. Journal of Parenteral & Enteral Nutrition 36(1): 96-107. Link
Beaulieu JM, Jhwueng DC, Boettiger C, O'Meara BC. 2012. Modeling stabilizing selection: Expanding the Ornstein-Uhlenbeck model of adaptive evolution. Evolution 66(8): 2369-2383. Link
Beckage B, Gross L, Platt W, Godsoe W, Simberloff D. 2012. Individual variation and weak neutrality as determinants of forest diversity. Frontiers of Biogeography 3(4): 145-155.
Birand A, Vose A, Gavrilets S. 2012. Patterns of species ranges, speciation, and extinction. The American Naturalist 179(1). Link
Bishop P. 2012. Dissertation: Impacts of an interdisciplinary research center on participant publication and collaboration activities. University of Tennessee. Link
Bode M, Armsworth PR, Fox HE, Bode L. 2012. Surrogates for reef fish connectivity when designing marine protected area networks. Marine Ecology Progress Series 466: 155-166. Link
Bodine EN, Gross LJ, Lenhart S. 2012. Order of events matter: Comparing discrete models for optimal control of species augmentation. Journal of Biological Dynamics 6(Supplement 2): 31-49. Link
Borchering RK, Liu H, Steinhaus MC, Gardner CL, Kuang Y. 2012. A simple spatiotemporal rabies model for skunk and bat interaction in northeast Texas. Journal of Theoretical Biology 314: 16-22. Link
Cantrell RS, Cosner C, Lou Y, Ryan D. 2012. Evolutionary stability of ideal free dispersal strategies: A nonlocal dispersal model. Canadian Applied Mathematics Quarterly 20(1): 15-38.
Ceddia MG. 2012. Optimal Disease Eradication in Sympatric Metapopulations. Environmental and Resource Economics 52(4): 499-530. Link
Chaudhary R, Burleigh JG, Fernandez-Baca D. 2012. Fast local search for unrooted Robinson-Foulds supertrees. IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(4): 1004-1013.
Choudhary S, Sood S, Donnell RL, Wang HC. 2012. Intervention of human breast cell carcinogenesis chronically induced by 2-amino-1-methyl-6-phenylimidazo[4,5-b]pyridine. Carcinogenesis 33(4): 876-885. Link
Christen JA, Capistran-Ocampo MA, Velasco-Hernandez JX. 2012. Towards uncertainty quantification and inference in the stochastic SIR epidemic model. Mathematical Biosciences 240(2).
Chu Y, Yao J, Guo H. 2012. QM/MM MD and free energy simulations of G9a-like protein (GLP) and its mutants: Understanding the factors that determine the product specificity. PLoS ONE 7(5): e37674. Link
Ciani F, Dall'Olio S, Stanyon R, Palagi E. 2012. Social tolerance and adult play in macaque societies: A comparison with different human cultures. Animal Behaviour 84(6): 1313-1322. Link
Collins C, Lenhart S, Nanda S, Xiong J, Yakovlev K, Yong J. 2012. Optimal control of harvesting in a stochastic metapopulation model. Optimal Control Applications & Methods 33(2): 127-142. Link
Cordoni G, Palagi E. 2012. Fair play and homnest signals in immature chimpanzees. Proceedings Societa Toscana 119: 97-101. Link
Crawley CE, Bishop PR. 2012. Communicating science through music: A case study from mathematics and biology. Quality, Honesty and Beauty in Science and Technology Communications. Public Understanding of Science and Technology 2012. Bucchi M, Trench B (Eds.). Observational Science in Society Publisher 288-290. ISBN: 978-88-904514-9-2. Link
Dall SRX, Bell AM, Bolnick DI, Ratnieks FLW. 2012. An evolutionary ecology of individual differences. Ecology Letters 15(10): 1189-1198. Link
Degnan JH, Rosenberg NA, Stadler T. 2012. A characterization of the set of species trees that produce anomalous ranked gene trees. IEEE-ACM Transactions on Computational Biology and Bioinformatics 9(6).
Dong et al. 2012. A dynamical systems model for improving gestational weight gain behavioral interventions. American Control Conference Published Proceedings from 27-29 June 2012, pp. 4059-4064. Link
Dorazio RM. 2012. Predicting the geographic distribution of a species from presence-only data subject to detection errors. Biometrics 68(4): 1303-1312. Link
Dunn et al. 2012. Indirect effects of parasites in invasions. Functional Ecology 26(6): 1262-1274. Link
Edelaar P, Bolnick DI. 2012. Non-random gene flow: An underappreciated force in evolution and ecology. Trends in Ecology & Evolution 27(12): 659-665. Link
Einarsson B, Birnir B, Bonilla L. 2012. Ordered, disordered and partially synchronized schools of fish. UC Santa Barbara: Center for Complex and Nonlinear Science. Link
Ekloef A, Helmus MR, Moore M, Allesina S. 2012. Relevance of evolutionary history for food web structure. roceedings of the Royal Society B: Biological Sciences 279(1733): 1588-1596. Link
Eldon B, Degnan J. 2012. Multiple merger gene genealogies in two species: Monophyly, paraphyly, and polyphyly for two examples of Lambda coalescents. Theoretical Population Biology 82(2): 117-130. Link
Elser JJ, Loladze I, Peace AL, Kuang Y. 2012. Lotka re-loaded: Modeling trophic interactions under stoichiometric constraints. Ecological Modelling 245: 3-11. Link
Feng Z, Velasco-Hernandez J, Tapia-Santos B, Leite MCA. 2012. A model for coupling within-host and between-host dynamics in an infectious disease. Nonlinear Dynamics 68(3): 401-411. Link
Finotti H, Lenhart S, Phan T. 2012. OPTIMAL CONTROL OF ADVECTIVE DIRECTION IN REACTION-DIFFUSION POPULATION MODELS. Evolution Equations and Control Theory 1(1): 81-107. Link
Fitzpatrick BM. 2012. Estimating ancestry and heterozygosity of hybrids using molecular markers. BMC Evolutionary Biology 12: 131. Link
Gavrilets S. 2012. Human origins and the transition from promiscuity to pair-bonding. Proceedings of the National Academy of Sciences 109(25). Link
Gavrilets S. 2012. On the evolutionary origins of the egalitarian syndrome. Proceedings of the National Academy of Sciences 109(35): 14069-14074. Link
Gilman RT, Fabina NS, Abbott KC, Rafferty NE. 2012. Evolution of plant-pollinator mutualisms in response to climate change. Evolutionary Applications 5(1): 2-16. Link
Gilman RT, Nuismer SL, Jhwueng DC. 2012. Coevolution in multidimensional trait space favours escape from parasites and pathogens. Nature 483(7389): 328-330. Link
Gilot-Fromont et al. 2012. The life cycle of Toxoplasma gondii in the natural environment. In: Olgica Djurkovic Djakovic (ed.), Toxoplasmosis - Recent Advances. ISBN 978-953-51-0746-0. Link
Godsoe W, Harmon LJ. 2012. How do species interactions affect species distribution models?. Ecography 35(9): 811-820. Link
Godsoe W. 2012. Are comparisons of species distribution models biased? Are they biologically meaningful. Ecography 35(9): 769-779. Link
Gong et al. 2012. Evolution of patterns on Conus shells. Proceedings of the National Academy of Sciences 109(5): E234-E241. Link
Gross LJ, Beckage B. 2012. Toward a metabolic scaling theory of crop systems. Proceedings of the National Academy of Sciences 109(39): 15535-15536. Link
Hakansson N. 2012. Dissertation: Network analysis and optimization of animal transports. Linkoping Studies in Science and Technology, Dissertation No. 1434, Linkoping University, Sweden. Link
Hamer SA, Hickling GJ, Sidge JL, Walker ED, Tsao JI. 2012. Synchronous phenology of juvenile Ixodes scapularis, vertebrate host relationships, and associated patterns of Borrelia burgdorferi ribotypes in the midwestern United States. Ticks and Tick-borne Diseases 3(2): 65-74. Link
Heitmann BL et al. 2012. Obesity: Lessons from evolution and the environment. Obesity Reviews 12(10): 910-922. Link
Heymsfield et al. 2012. Energy content of weight loss: Kinetic features during voluntary caloric restriction. Metabolism 61(7): 937-943. Link
Heymsfield SB, Muller MJ, Bosy-Westphal A, Thomas D, Shen W. 2012. Human brain mass: Similar body composition associations as observed across mammals. American Journal of Human Biology 24(4): 479-485. Link
Hodkinson BP, Lendemer JC. 2012. Phylogeny and taxonomy of an enigmatic sterile lichen. Systematic Botany 37(4): 865-844. Link
Hritonenko N, Yatsenko YU. 2012. Bang-bang, impulse, and sustainable harvesting in age-structured populations. Journal of Biological Systems 20(2): 133. Link
Jensen CXJ. 2012. Ratio dependent predator-prey theory: Aged, mellowed, and distilled. Ecological Modelling 246: 103-104. Link
Jiang W, Sullivan AM, Su C, Zhao X. 2012. An agent-based model for the transmission dynamics of Toxoplasma gondii. Journal of Theoretical Biology 293(21): 15-26. Link
Langlais M, Lelu M, Avenet C, Gilot-Fromont E. 2012. A simplified model system for Toxoplasma gondii spread within a heterogeneous environment. Nonlinear Dynamics 68(3): 381-399. Link
Leander R, Lenhart S, Protopopescu V. 2012. Using optimal control theory to identify network structures that foster synchrony. Physica D-Nonlinear Phenomena 241(5): 574-582. Link
Lelu et al. 2012. Quantitative estimation of the viability of Toxoplasma gondii oocysts in soil. Applied and Environmental Microbiology 78(15): 5127-5132. Link
Lennartsson J, Hakansson N, Wennergren U, Jonsson A. 2012. SpecNet: A spatial network algorithm that generates a wide range of specific structures. PLoS ONE 7(8): e42679. Link
Lennartsson J. 2012. Dissertation: Networks and epidemics - impact of network structure on disease transmission. Linkoping Studies in Science and Technology, Dissertation No. 1433, Linkoping University, Sweden. Link
Lennox GD, Dallimer M, Armsworth PR. 2012. Landowners' ability to leverage in negotiations over habitat conservation. Theoretical Ecology 5(1): 115-128. Link
Liancourt P, Choler P, Gross N, Thibert-Plante X, Tielborger K. 2012. How facilitation may interfere with ecological speciation. International Journal of Ecology, vol. 2012 (Article ID: 725487). Link
Liebhold AM, Haynes KJ, Bjornstad ON. 2012. Spatial synchrony of insect outbreaks. In: Barbosa P, Letourneau DK, Agrawal AA (eds.), Insect Outbreaks Revisited, pp. 113-125. NY: Wiley. Link
Lindstrom T, Lewerin SS, Wennergren U. 2012. Influence on disease spread dynamics of herd characteristics in a structured livestock industry. Journal of the Royal Society Interface 9(71): 1287-1294. Link
Lindstrom T, Sisson SA, Hakansson N, Bergman KO, Wennergren U. 2012. A spectral and Bayesian approach for analysis of fluctuations and synchrony in ecological datasets. Methods in Ecology and Evolution 3(6): 1019-1027. Link
Logdberg F, Wennergren U. 2012. Spectral color, synchrony, and extinction risk. Theoretical Ecology 5(4): 545-554. Link
Louzoun Y, Ganusov VV. 2012. Evolution of viral life-cycle in response to cytotoxic T lymphocyte-mediated immunity. Journal of Theoretical Biology 310: 3-13. Link
Marquez EJ, Cabeen R, Woods RP, Houle D. 2012. The measurement of local variation in shape. Evolutionary Biology 39(3): 419-439.
Martinez-Vega et al. 2012. A prospective cohort study to evaluate peridomestic infection as a determinant of dengue transmission: Protocol. BMC Public Health 12: 262. Link
McCandlish DM. 2012. Dissertation: Evolution on arbitrary fitness landscapes when mutation is weak. Duke University.
Mesterton-Gibbons M, Sherratt TN. 2012. Divide and conquer: When and how should competitors share?. Evolutionary Ecology 26(4): 943-954. Link
Momotani E. 2012. Epidemiological situation and control strategies for paratuberculosis in Japan. The Japanese Journal of Veterinary Research 60(Supplement S): S19-29. Link
Momotani et al. 2012. Molecular pathogenesis of bovine paratuberculosis and human inflammatory bowel diseases. Veterinary Immunology and Immunopathology 148(1-2): 55-68. Link
Moran EV, Clark JS. 2012. Between-site differences in the scale of dispersal and gene flow in red oak. PLoS ONE 7(5).
Moran EV, Clark JS. 2012. Causes and consequences of unequal seedling production in forest trees: A case study in red oaks. Ecology 93(5): 1082-1094. Link
Moran EV, Willis J, Clark JS. 2012. Genetic evidence for hybridization in red oaks (quercus sect. lobatae, fagaceae). American Journal of Botany 99(1): 92-100. Link
Ngonghala CN, Ngwa GA, Teboh-Ewungkem MI. 2012. Periodic oscillations and backward bifurcation in a model for the dynamics of malaria transmission. Mathematical Biosciences 240(1): 45-62. Link
Nikitina et al. 2012. Mtb-Specific CD27(low) CD4 T Cells as Markers of Lung Tissue Destruction during Pulmonary Tuberculosis in Humans. PLoS ONE 7(8): e43733. Link
Oufiero CE, Holzman RA, Young FA, Wainwright PC. 2012. New insights from serranid fishes on the role of trade-offs in suction-feeding diversification. The Journal of Experimental Biology 215(pt. 21): 3845-3855. Link
Palagi E, Cordoni G. 2012. The right time to happen: Play developmental divergence in the two pan species. PLoS ONE 7(12): e52767.
Perminov VD. 2012. On the reproduction number and a presentation of results for infectious diseases models. Journal of Life Scienes 6: 754-757. Link
Potochnik A, McGill B. 2012. The limitations of hierarchical organization. Philosophy of Science 79(1): 120-140. Link
Potochnik A. 2012. Modeling social and evolutionary games. Studies in History and Philosophy of Biological and Biomedical Sciences 43(1): 202-208. Link
Qin H, Shapiro A, Yang L (editors). 2012. Emerging infectious disease: A computational multi-agent model. IEEE 2012 ASE International Conference on Biomedical Computing.
Rathore K, Choudhary S, Odoi A, Wang HC. 2012. Green tea catechin intervention of reactive oxygen species-mediated ERK pathway activation and chronically induced breast cell carcinogenesis. Carcinogenesis 33(1): 174-183. Link
Rathore K, Wang HC. 2012. Green tea catechin extract in intervention of chronic breast cell carcinogenesis induced by environmental carcinogens. Molecular Carcinogenesis 51(3): 280-289. Link
Rice WR, Friberg U, Gavrilets S. 2012. Homosexuality as a consequence of epigenetically canalized sexual development. The Quarterly Review of Biology 87(4): 343-368. Link
Rosen et al. 2012. Borrelia burgdorferi not detected in widespread Ixodes scapularis (Acari: Ixodidae) collected from white-tailed deer in Tennessee. Journal of Medical Entomology 49(6): 1473-1480. Link
Schraiber et al. 2012. Constraints on the use of lifespan-shortening Wolbachia to control dengue fever. Journal of Theoretical Biology 297: 33. Link
Simmerman et al. 2012. Exploring similarities among many species distributions. Proceedings of the 1st Conference of the Extreme Science and Engineering Discovery Environment 2012: Bridging from the eXtreme to the campus and beyond, article no. 38. Link
Skyrms B. 2012. Aspects of naturalizing the social contract. In: Aoki M, Binmore K, Deakin S, Gintis H (eds.), Complexity and Institutions: Markets, Norms and Corporations, pp. 124-145. New York: Palgrave Macmillan.
Smith G. 2012. Preferential sexual transmission of pseudorabies virus in feral swine populations may not account for observed seroprevalence in the USA. Preventive Veterinary Medicine 103(2-3): 145-156. Link
Smith K. 2012. Undergraduate Honors Thesis: Modeling the effect of diversity in host plant-herbivore-predator interactions. Ursinus College.
Sorensen TI. 2012. Is obesity a healthy active response to an expected future lack of energy rather than a passive storage of surplus energy?. Obesity Facts 5(3): 431-435. Link
Souza MJ, Cairns T, Yarbrough J, Cox S. 2012. In vitro investigation of a terbinafine impregnated subcutaneous implant for veterinary use. Journal of Drug Delivery 2012(2012): 436710. Link
Spada G. 2012. Gioco sociale e comunicazione multimodale in Lemur catta: Uno studio etologico in natura. Universita di Pisa.
Stadler T, Degnan JH. 2012. A polynomial time algorithm for calculating the probability of a ranked gene tree given a species tree. Algorithms for Molecular Biology 7: 1-9. Link
Stinchcombe JR, Function-valued Traist Working Group, Kirkpatrick M. 2012. Genetics and evolution of function-valued traits: Understanding environmentally responsive phenotypes. Trends in Ecology & Evolution 27(11): 637-647. Link
Stromdahl EY, Hickling GJ. 2012. Beyond Lyme: Aetiology of tick-borne human diseases with emphasis on the south-eastern United States. Zoonoses and Public Health 59(issue suplement s2): 48-64. Link
Su C et al. 2012. Globally diverse Toxoplasma gondii isolates comprise six major clades originating from a small number of distinct ancestral lineages. PNAS 109(15): 5844-5849. Link
Sullivan A, Agusto F, Bewick S, Lenhart S, Zhao X. 2012. A mathematical model for within-host Toxoplasma gondii invasion dynamics. Mathematical Biosciences and Engineering 9(3): 647-662. Link
Thomas et al. 2012. Dynamic energy-balance model predicting gestational weight gain. The American Journal of Clinical Nutrition 95(1): 115-122. Link
Thomas et al. 2012. Why do individuals not lose more weight from an exercise intervention at a defined dose? An energy balance analysis. Obesity Reviews 13(10): 835-847. Link
Tildesley MJ, Ryan SJ. 2012. Disease prevention versus data privacy: Using landcover maps to inform spatial epidemic models. PLoS Computational Biology 8(11): e1002723. Link
Turchin et al. 2012. A historical database of sociocultural evolution. Cliodynamics: The Journal of Theoretical and Mathematical History 3(2): 271-293. Link
Vargas R. 2012. How a hurricane disturbance influences extreme CO2 fluxes and variance in a tropical forest. Environmental Research Letters 7(3): 035704. Link
Weisrock et al. 2012. Concatenation and concordance in the reconstruction of mouse lemur phylogeny: An empirical demonstration of the effect of allele sampling in phylogenetics. Molecular Biology and Evolution 29(6): 1615-1630. Link
Weitz JS, Wilhelm SW. 2012. Ocean viruses and their effects on microbial communities and biogeochemical cycles. F1000 Biology Reports 4(17). Link
Xia H, Wong K, Zhao X. 2012. A fully coupled model for electromechanics of the heart. Computational and Mathematical Methods in Medicine 2012: Article ID 927279. Link
Xia HN, Garcia GA, Bains J, Wortham DC, Zhao XP. 2012. Matrix of regularity for improving the quality of ECGs. Physiological Measurement 33(9): 1535-1548. Link
Yang Y, Ricarda R, Morawetz JJ, Haevermans T, Aubriot X, Berry PE. 2012. Molecular phylogenetics and classification of Euphorbia subgenus Chamaesyce (Euphorbiaceae). Taxon 61(4): 764-789(26). Link
Yang Y. 2012. Senior Thesis: The Kalman filter combined with Hungarian algorithm successfully tracked fast moving peroxisomes. The Beloit Biologist, Beloit College, Beloit, WI.
Yao JZ, Chu YZ, An R, Guo H. 2012. Understanding product specificity of protein lysine methyltransferases from QM/MM molecular dynamics and free energy simulations: The effects of mutation on SET7/9 beyond the Tyr/Phe switch. Journal of Chemical Information and Modeling 52(2): 449-456. Link
Yin et al. 2012. A framework of integrating GIS and parallel computing for spatial control problems - a case study of wildfire control. International Journal of Geographical Information Science 26(4): 621-641. Link
Yong J. 2012. Deterministic time-inconsistent optimal control problems - an essentially cooperative approach. Acta Mathematicae Applicatae Sinica 28(1): 1-30. Link
Yu Y, Degnan JH, Nakhleh L. 2012. The probability of a gene tree topology within a phylogenetic network with applications to hybridization detection. PLoS Genetics 8(4): 456-465. Link
Zhong P, Lenhart S. 2012. Optimal control of integrodifference equations with growth-harvesting-dispersal order. Discrete and Continuous Dynamical Systems-Series B 17(6): 2281-2298. Link
Zychaluk K, Bruno JF, Clancy D, McClanahan TR, Spencer M. 2012. Data-driven models for regional coral-reef dynamics. Ecology Letters 15(2): 151-158. Link

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Publications 2011 Online
Abdelmageed S. 2011. Undergraduate Honors Thesis: Uncertainty analysis of complex dynamical models. Ursinus College.
Abu-Khzam FN, Fernau H, Langston MA, Lee-Cultura S, Stege U. 2011. Charge and reduce: A fixed-parameter algorithm for String-to-String Correction. Discrete Optimization 8(1): 41-49. Link
Agusto FB, Lenhart S, Gumel AB, Odoi A. 2011. Mathematical analysis of a model for the transmission dynamics of bovine tuberculosis. Mathematical Methods in the Applied Sciences 34(15): 1873-1887. Link
Akcay E, Roughgarden J. 2011. The evolution of payoff matrices: Providing incentives to cooperate. Proceedings of the Royal Society B: Biological Sciences 278(1715). Link
Akcay E, Simms E. 2011. Negotiation, sanctions, and context dependency in the legume-rhizobium mutualism. The American Naturalist 178(1): 1-14. Link
Alexanderian A, Gobbert MK, Fister KR, Gaff H, Lenhart S, Schaefer E. 2011. An age-structured model for the spread of epidemic cholera: Analysis and simulation. Nonlinear Analysis-Real World Applications 12(6): 3483-3498. Link
An G, Bartels J, Vodovotz Y. 2011. In silico augmentation of the drug development pipeline: Examples from the study of acute inflammation. Drug Development Research 72(2): 187-200. Link
An G, Christley S. 2011. Agent-based modeling and biomedical ontologies: A roadmap. Wiley Interdisciplinary Reviews: Computational Statistics 3(4): 343-356. Link
Araujo MS, Bolnick DI, Layman CA. 2011. The ecological causes of individual specialisation. Ecology Letters 14(9): 948-958. Link
Barnosky et al. 2011. Has the Earth's sixth mass extinction already arrived?. Nature 471(7336): 51-57. Link
Beckage B, Gross L, Kauffman S. 2011. The limits to prediction in ecological systems. Ecosphere 2(11): article 125. Link
Beckage B, Gross L, Platt WJ. 2011. Grass feedbacks on fire stabilize savannas. Ecological Modelling 222(14): 2227-2233. Link
Bewick S, Stuble KL, Lessard JP, Dunn R, Adler F, Sanders N. 2011. When Climate and Trade-offs Interact: the unbalancing effects of warming on species coexistence. The American Naturalist.
Bewick S, Zhang M, Hamel W. 2011. Passive versus aggressive strategies: A game theoretic analysis of military and immune defense. IEEE Transactions on Systems, Man and Cybernetics - Part A: Systems and Humans, vol. 41(3): 583-588. Link
Bolnick DI, Araujo MS. 2011. Partitioning the relative fitness effects of diet and trophic morphology in the threespine stickleback. Evolutionary Ecology Research 13(5): 439-459. Link
Bolnick et al. 2011. Why intraspecific trait variation matters in community ecology. Trends in Ecology & Evolution 26(4): 183-192. Link
Carmona-Fontaine et al. 2011. Complement fragment C3a controls mutual cell attraction during collective cell migration. Developmental Cell 21(6): 1026-1037. Link
Ceddia MG, Bartlett M, De Lucia C, Perrings C. 2011. On the regulation of spatial externalities: Coexistence between GM and conventional crops in the EU and the 'newcomer principle'. The Australian Journal of Agricultural and Resource Economics 55(1): 126-143. Link
Cooper IA, Gilman RT, Boughman JW. 2011. Sexual dimorphism and speciation on two ecological coins: Patterns from nature and theoretical predictions. Evolution 65(9): 2553-2571. Link
DeAngelis et al. 2011. The effect of travel loss on evolutionarily stable distributions of populations in space. The American Naturalist 178(1): 15-29. Link
Dorazio RM, Gotelli NJ, Ellison AM. 2011. Modern methods of estimating biodiversity from presence-absence surveys. In: Grillo O (ed.), Biodiversity Loss in a Changing Planet, pp. 277-302. ISBN 13:9789533077079. Link
Ellis-Monoghan J, Pangborn G. 2011. Using DNA self-assembly design strategies to motivate graph theory concepts. Mathematical Modelling of Natural Phenomena 6(6): 96-107. Link
Elser JJ, Kuang Y. 2011. Ecological stoichiometry. In: Hastings A, Gross L (eds.), Sourcebook in Theoretical Ecology, University of California Press, in press. Link
Fenichel et al. 2011. Adaptive human behavior in epidemiological models. Proceedings of the National Academy of Sciences 108(15): 6306-6311. Link
Gilman RT, Behm JE. 2011. Hybridization, species collapse, and species reemergence after disturbance to premating mechanisms of reproductive isolation. Evolution 65(9): 2592-2605. Link
Gonzalez PA, Lee S, Velazquez L, Castillo-Chavez C. 2011. A note on the use of optimal control on a discrete time model of influenza dynamics. Mathematical Biosciences and Engineering 8(1): 183-197. Link
Gonzalez-Parra PA. 2011. Dissertation: Optimal Control applied to a discrete influenza model. University of Texas, El Paso. Link
Guo Z, Adomas AB, Jackson ED, Qin H, Townsend JP. 2011. SIR2 and other genes are abundantly expressed in long-lived natural segregants for replicative aging of the budding yeast Saccharomyces cerevisiae. FEMS Yeast Res 11(4): 345-55. Link
Hallam TG, Federico P. 2011. The panzootic white-nose syndrome: An environmentally constrained disease?. Transboundary and Emerging Diseases 59(3): 269-278. Link
Hallam TG, McCracken GF. 2011. Management of the panzootic white-nose syndrome through culling of bats. Conservation Biology 25(1): 189-194. Link
Hartvigsen G. 2011. Using R to build and assess network models in biology. Mathematical Modelling of Natural Phenomena 6(6): 61-75. Link
Hinkelmann F, Murrugarra D, Laubenbacher R, Jarrah AS. 2011. A mathematical framework for agent based models of complex biological networks. Bulletin of Mathematical Biology 73(7): 1583-1602. Link
Horan RD, Fenichel EP, Melstrom RT. 2011. Wildlife disease bioeconomics. International Review of Environmental and Resource Economics 5(1): 23-61.
Horan RD, Melstrom RT. 2011. No sympathy for the devil. Journal of Environmental Economics and Management 62(3): 367-385. Link
Hsieh YH, Ma S, Hernandez JXV, Lee VJ, Lim WY. 2011. Early Outbreak of 2009 Influenza A (H1N1) in Mexico Prior to Identification of pH1N1 Virus. PLoS ONE 6(8): e23853. Link
Hsieh Y-H, Ma S, Velasco Hernandez JX, Lee VJ, Lim WY. 2011. Early Outbreak of 2009 Influenza A (H1N1) in Mexico Prior to Identification of pH1N1 Virus. PLoS ONE 6(8): e23853. Link
Ingram T, Stutz WE, Bolnick DI. 2011. Does Intraspecific Size Variation in a Predator Affect Its Diet Diversity and Top-Down Control of Prey?. PLoS ONE 6(6): e20782. Link
Jordan-Cooley WC, Lipcius RN, Shaw LB, Shen J, Shi J. 2011. Bistability in a differential equation model of oyster population and sediment volume. Journal of Theoretical Biology 289: 1. Link
Kakai et al. 2011. Ecological adaptation of the shea butter tree (Vitellaria paradoxa CF Gaertn.) along climatic gradient in Benin, West Africa. African Journal of Ecology 49(4): 440-449. Link
Kohler T,  Hooper PL, Bocinsky RK, Kobti Z. 2011. The coevolution of group size and leadership: An agent-based public goods model for prehispanic pueblo societies. Advances in Complex Systems 15(1): 1150007. Link
Konrad A, Teufel AI, Grahnen JA, Liberles DA. 2011. Toward a general model for the evolutionary dynamics of gene duplicates. Genome Biology and Evolution 3: 1197-1209. Link
Krakauer DC, Page K, Flack J. 2011. The immuno-dynamics of conflict intervention in social systems. PLoS ONE 6(8): e22709. Link
Krivan V. 2011. On the Gause predator-prey model with a refuge: A fresh look at the history. Journal of Theoretical Biology 274(1): 67-73. Link
Lennox GD, Armsworth PR. 2011. Suitability of short or long conservation contracts under ecological and socio-economic uncertainty. Ecological Modelling 222(15): 2856-2866. Link
Lewis CL. 2011. Mathematical models with antibody and cytotoxic T lymphocyte responses due to hantavirus infections in rodents and humans. Texas Tech University.
Liu L, Yu L, Kalavacharla V, Liu Z. 2011. A Bayesian model for gene family evolution. BMC Bioinformatics 12: 426. Link
Logdberg F. 2011. Dissertation: Population dynamics in variable environments - impacts of noise colour and synchrony. Linkoping Studies in Science and Technology, Dissertation No. 1416, Linkoping University, Sweden. .
Loladze I, Elser JJ. 2011. The origins of the Redfield nitrogen-to-phosphorus ratio are in a homoeostatic protein-to-rRNA ratio. Ecology Letters 14(3): 244-250. Link
Mao Y. 2011. Dynamical basis for drug resistance of HIV-1 protease. BMC Structural Biology 11: 31. Link
Mao Y. 2011. Dynamics studies of luciferase using elastic network model: How the sequence distribution of luciferase determines its color. Protein Engineering, Design and Selection 24(4): 341-349. Link
Martcheva M. 2011. An immuno-epidemiological model of paratuberculosis. AIP Conference Proceedings 1404(1): 176-183.
Massol F, Gravel D, Mouquet N, Cadotte MW, Fukami T, Leibold MA. 2011. Linking community and ecosystem dynamics through spatial ecology. Ecology Letters 14(3): 313-323. Link
Mesterton-Gibbons M, Gavrilets S, Gravner J, Akcay E. 2011. Models of coalition or alliance formation. Journal of Theoretical Biology 274(1): 187-204. Link
Mesterton-Gibbons M, Sherratt TN. 2011. Information, variance and cooperation: Minimal models. Dynamic Games and Applications 1(3): 419-439. Link
Moran EV, Clark JS. 2011. Estimating seed and pollen movement in a monoecious plant: A hierarchical Bayesian approach integrating genetic and ecological data. Molecular Ecology 20(6): 1248-1262. Link
Neilan RM, Lenhart S. 2011. Optimal vaccine distribution in a spatiotemporal epidemic model with an application to rabies and raccoons. Journal of Mathematical Analysis and Applications 378(2): 603-619. Link
Parshad RD, Agusto FB. 2011. Global dynamics of a PDE model for Aedes aegypti mosquitoe incorporating female sexual preference. Dynamics of Partial Differential Equations 8(4): 311-343.
Rao AR, Cecchi GA. 2011. The effects of feedback and lateral connections on perceptual processing: A study using oscillatory networks. 2011 International Joint Conference on Neural Networks (IJCNN) 1177-1184.
Riechert SE, Leander RN, Lenhart SM. 2011. A role-playing exercise that demonstrates the process of evolution by natural selection: Caching squirrels in a world of pilferers. The American Biology Teacher 73(4): 208-212. Link
Sackett TE, Record S, Bewick S, Baiser B, Sanders NJ, Ellison AM. 2011. Response of macroarthropod assemblages to the loss of hemlock (Tsuga canadensis), a foundation species. Ecosphere 2(7): UNSP 74. Link
Schreiber SJ, Burger R, Bolnick DI. 2011. The community effects of phenotypic and genetic variation within a predator population. Ecology 92(8): 1582-1593. Link
Sekercioglu et al. 2011. Turkey's globally important biodiversity in crisis. Biological Conservation 144(12): 2752-2769.
Shah P, Gilchrist MA. 2011. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift. Proceedings of the National Academy of Sciences 108(25): 10231-10236. Link
Shah P. 2011. Dissertation: On the evolution of codon usage bias. Univ. of Tennessee, Knoxville.
Smith et al. 2011. Comparative phylogeography of a coevolved community: Concerted population expansions in Joshua trees and four Yucca moths. PLoS ONE 6(10): e25628. Link
Tannenbaum L. 2011. Undergraduate Honors Thesis: Difference and differential equations models of Vancomycin-resistant Enterococci. Ursinus College.
Thibert-Plante X, Hendry AP. 2011. Factors influencing progress toward sympatric speciation. Journal of Evolutionary Biology 24(10): 2186-2196. Link
Thibert-Plante X, Hendry AP. 2011. The consequences of phenotypic plasticity for ecological speciation. Journal of Evolutionary Biology 24(2): 326-342. Link
Ubeda F, Gardner A. 2011. A model for genomic imprinting in the social brain: Adults. Evolution 65(2): 462-475. Link
Ubeda F, Wilkins JF. 2011. The Red Queen theory of recombination hotspots. Journal of Evolutionary Biology 24(3): 541-553. Link
Vasseur DA, Amarasekare P, Rudolf VHW, Levine JM. 2011. Eco-evolutionary dynamics enable coexistence via neighbor-dependent selection. The American Naturalist 178(5): E96-E109. Link
Velasco-Hernandez JX, Leite MCA. 2011. A model for the A(H1N1) epidemic in Mexico, including social isolation. Salud Publica de Mexico 53(1): 1-8. Link
Yong J. 2011. A deterministic linear quadratic time-inconsistent optimal control problem. Mathematical Control and Related Fields 1(1): 83-118. Link

   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Publications 2010 Online
Agusto FB, Ogunye OR. 2010. Avian influenza optimal seasonal vaccination strategy. ANZIAM Journal 51(4): 394-405. Link
Agusto FB, Okosun KO. 2010. Optimal seasonal biocontrol for Eichhornia crassipes. International Journal of Biomathematics 3(3): 1-15. Link
An G. 2010. Closing the scientific loop: Bridging correlation and causality in the petaflop age. Science Translational Medicine 2(41): 41ps34. Link
An G. 2010. Translational systems biology using an agent-based approach for dynamic knowledge representation: An evolutionary paradigm for biomedical research. Wound Repair and Regeneration 18(1): 8-12. Link
Beckage B, Godsoe W, Gross L, Platt W, Simberloff D. 2010. Individual variation slows competitive exclusion. Science, e-letter published online 14 July 2010. Link
Benson B. 2010. Dissertation: White nose syndrome and migration of Delaware's bats. Delaware State University.
Bodine EN. 2010. Dissertation: Optimal control of species conservation strategies. University of Tennessee, Knoxville, TN.
Brock WA, Kinzig AP, Perrings C. 2010. Modeling the economics of biodiversity and environmental heterogeneity. Environmental and Resource Economics 46(1): 43-58. Link
Canner J. 2010. Dissertation: The population ecology of ant-dispersed plants in space and time. North Carolina State University, Raleigh, NC.
Carrillo-Valenzo et al. 2010. Evolution of dengue virus in Mexico is characterized by frequent lineage replacement. Archives of Virology 155(9): 1401-1412. Link
Collins C, Fister KR, Williams M. 2010. Optimal control of a cancer cell model with delay. Mathematical Modelling of Natural Phenomena 5(3): 63-75. Link
Cusimano N, Renner SS. 2010. Slowdowns in diversification rates from real phylogenies may not be real. Systematic Biology 59(4): 458-464. Link
Ding W, Lenhart S. 2010. Introduction to optimal control for discrete time models with an application to disease modeling. Modeling Paradigms and Analysis of Disease Transmission Models DIMACS Series in Discrete Mathematics and Theoretical Computer Science 75: 109-119. Link
D'Onofrio D, An G. 2010. A comparative approach for the investigation of biological information processing: An examination of the structure and function of computer hard drives and DNA. Theoretical Biology and Medical Modelling 7: 3. Link
Duncan SI, Bishop P, Lenhart S. 2010. Preparing the "New" Biologist of the Future: Student Research at the Interface of Mathematics and Biology. CBE - Life Sciences Education 9(3): 311-315. Link
Fenichel EP, Horan RD, Hickling GJ. 2010. Bioeconomic management of invasive vector-borne diseases. Biological Invasions 12(9): 2877-2893. Link
Fenichel EP, Horan RD, Hickling GJ. 2010. Management of infectious wildlife diseases: Bridging conventional and bioeconomic approaches. Ecological Applications 20(4): 903-914. Link
Frick et al. 2010. A common bat faces rapid extinction in the northeastern US from fungal pathogen. Science.
Frick et al. 2010. An emerging disease causes regional population collapse of a common North American bat species. Science 329(5992): 679-82. Link
Frick WF, Reynolds DS, Kunz TH. 2010. Influence of climate and reproductive timing on demography of little brown myotis Myotis lucifugus. Journal of Animal Ecology 79(1): 128-136. Link
Fujitani Y, Kawai J, Kobayashi I. 2010. Random-walk mechanism in the genetic recombination. Advances in Experimental Medicine and Biology 680: 275-82. Link
Furuta Y, Abe K, Kobayashi I. 2010. Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Research 38(7): 2428-2443. Link
Gardner A. 2010. Sex-biased dispersal of adults mediates the evolution of altruism among juveniles. Journal of Theoretical Biology 262(2): 339-345. Link
Gavrilets S, Anderson D, Turchin P. 2010. Cycling in the complexity of early societies. Cliodynamics: The Journal of Theoretical and Mathematical History 1(1): 58-80. Link
Gavrilets S. 2010. Rapid transition towards the division of labor via evolution of developmental plasticity. PLoS Computational Biology 6(6): e1000805. Link
Giraud T, Gladieux P, Gavrilets S. 2010. Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology & Evolution 25(7): 387-395. Link
Godsoe W, Yoder JB, Smith CI, Drummond CS, Pellmyr O. 2010. Absence of population-level phenotype matching in an obligate pollination mutualism. Journal of Evolutionary Biology 23(12): 2739-2746. Link
Godsoe W. 2010. I can't define the niche but I know it when I see it: A formal link between statistical theory and the ecological niche. Oikos 119(1): 53-60. Link
Godsoe W. 2010. Regional variation exaggerates ecological divergence in niche models. Systematic Biology 59(3): 298-306. Link
Gonzalez-Parra P, Velazquez L, Villalobos MC, Castillo-Chavez C. 2010. Optimal Control applied to a discrete influenza model. In: Angeli F (Ed.), Operations Research for Patient-Centered Health Care Delivery, Proceedings of the XXXVI International ORAHS Conference, ISBN 13:9788856825954. Link
Gotelli NJ, Dorazio RM, Ellison AM, Grossman GD. 2010. Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models. Philosophical Transactions of the Royal Society B: Biological Sciences 365(1558): 3621-3631. Link
Hamer SA, Tsao JI, Walker ED, Hickling GJ. 2010. Invasion of the Lyme Disease vector Ixodes scapularis: Implications for Borrelia burgdorferi endemicity. Ecohealth 7(1): 47-63. Link
Harp JR, Gilchrist MA, Onami TM. 2010. Memory T cells are enriched in lymph nodes of selectin-ligand-deficient mice. Journal of Immunology 185(10): 5751-5761. Link
Horan RD, Fenichel EP, Wolf CA, Gramig BM. 2010. Managing infectious animal disease systems. Annual Review of Resource Economics 2010(2): 101-124. Link
Khan et al. 2010. A putative mobile genetic element carrying a novel type IIF restriction-modification system (PluTI). Nucleic Acids Research 38(9): 3019-3030. Link
Krivan V. 2010. Evolutionary stability of optimal foraging Partial preferences in the diet and patch models. Journal of Theoretical Biology 267(4): 486-494. Link
Lindstrom T. 2010. Dissertation: Spatial spread of organisms: Modelling ecological and epidemiological processes. Linkoping University, Sweden.
Meyer K, Kirkpatrick M. 2010. Better Estimates of Genetic Covariance Matrices by "Bending'' Using Penalized Maximum Likelihood. Genetics 185(3): 1097-1110. Link
Mi et al. 2010. Translational systems biology of inflammation: Potential applications to personalized medicine. Personalized Medicine 7(5): 549-559. Link
Miller Neilan R, Lenhart S. 2010. An introduction to optimal control with an application in disease modeling. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 75: 67-81. Link
Much K. 2010. Undergraduate Honors Thesis: Mathematical modeling and sensitivity analysis of antibiotic resistance. Ursinus College.
Neilan RLM, Schaefer E, Gaff H, Fister KR, Lenhart S. 2010. Modeling optimal intervention strategies for cholera. Bulletin of Mathematical Biology 72(8): 2004-2018. Link
Ozpolat BD, Akcay E, Somel N, Somel M. 2010. Bringing the understanding of evolution to Turkish public: A volunteer organization model for developing countries. Developmental Biology 344(1): 439. Link
Pannkuk EL. 2010. Dissertation: Fungal metabolism of chiropteran integument and biomechanical damage by geomyces species.
Perrings C, Burgiel S, Lonsdale WM, Mooney H, Williamson M. 2010. International cooperation in the solution to trade-related invasive species risks. Annals of the New York Academy of Sciences 1195: 198-212. Link
Perrings C. 2010. Exotic effects of capital accumulation. Proceedings of the National Academy of Sciences 107(27): 12063-12064. Link
Potochnik A. 2010. Modeling social and evolutionary games. Studies in History and Philosophy of Biological and Biomedical Sciences.
Rice WR, Gavrilets S, Friberg U. 2010. The evolution of sex-specific grandparental harm. roceedings of the Royal Society B: Biological Sciences 277(1694): 2727-2753. Link
Riechert SE, Post BK. 2010. From skeletons to bridges & other STEM enrichment exercises for high school biology. The American Biology Teacher 72(1): 20-22. Link
Roughgarden J, Akcay E. 2010. Do we need a Sexual Selection 2.0?. Animal Behaviour 79(3): e1-e4. Link
Roughgarden J, Akcay E. 2010. Final response: Sexual selection needs an alternative. Animal Behaviour 79(3): e18-e23. Link
Sebastian P, Schaefer H, Telford IRH, Renner SS. 2010. Cucumber (Cucumis sativus) and melon (C. melo) have numerous wild relatives in Asia and Australia, and the sister species of melon is from Australia. Proceedings of the National Academy of Sciences 107(32): 14269-14273. Link
Shah P, Gilchrist MA. 2010. Effect of correlated tRNA abundances on translation errors and evolution of codon usage bias. PLoS Genetics 6(9): e1001128. Link
Shah P, Gilchrist MA. 2010. Is thermosensing property of RNA thermometers unique?. PLoS ONE 5(7): e1130. Link
Slocum MG, Beckage B, Platt WJ, Orzell SL, Taylor W. 2010. Effect of climate on wildfire size: A cross-scale analysis. Ecosystems 13(6): 828-840. Link
Smith? RJ, Okano JT, Kahn JS, Bodine EN, Blower S. 2010. Evolutionary dynamics of complex networks of HIV drug-resistant strains: The case of San Francisco. Science 327(5966): 697-701. Link
Tang G, Beckage B. 2010. Projecting the distribution of forests in New England in response to climate change. Diversity and Distributions 16(1): 144-158. Link
Thibert-Plante X, Hendry AP. 2010. When can ecological speciation be detected with neutral loci?. Molecular Ecology 19(11): 2301. Link
Turchin P. 2010. Warfare and the evolution of social complexity: A multilevel-selection approach. Structure and Dynamics 4(3): 1-37. Link
Ubeda F, Gardner A. 2010. A model for genomic imprinting in the social brain: Juveniles. Evolution 64(9): 2587-2600. Link
Vodovotz et al. 2010. Translational systems approaches to the biology of inflammation and healing. Immunopharmacol Immunotoxicology 32(2): 181-195. Link
Wise SM. 2010. Unconditionally stable finite difference, nonlinear multigrid simulation of the Cahn-Hilliard-Hele-Shaw system of equations. Journal of Scientific Computing 44(1): 38-68. Link
Yoder et al. 2010. Ecological opportunity and the origin of adaptive radiations. Journal of Evolutionary Biology 23(8): 1581-1596. Link

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Publications 2009 Online
Akcay E, Van Cleve J, Feldman MW, Roughgarden J. 2009. A theory for the evolution of other-regard integrating proximate and ultimate perspectives. Proceedings of the National Academy of Sciences 106(45): 19061-19066. Link
Araujo MS, Bolnick DI, Martinelli LA, Giaretta AA, Dos Reis SF. 2009. Individual-level diet variation in four species of Brazilian frogs. Journal of Animal Ecology 78(4): 848-856. Link
Beckage B, Platt WJ, Gross LI. 2009. Vegetation, fire, and feedbacks: A disturbance-mediated model of savannas. The American Naturalist 174(6): 805-818. Link
Castiglione F. 2009. Agent Based Modeling and Simulation, Introduction to. In: Meyers R (ed.), Encyclopedia of Complexity and Systems Science 1, pp. 197-200. Springer: New York. Link
Duenez-Guzman EA, Mavarez J, Vose MD, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 4. Hybrid speciation in butterflies in a jungle. Evolution 63(10): 2611-2626. Link
Duenez-Guzman EA, Vose AD, Vose MD, Gavrilets S. 2009. Simulating population genetics on the XT5. Published Collection: Proceedings of the Compute the Future Cray Users Group Conference, Atlanta, GA. Link
Fitzpatrick BM, Fordyce JA, Gavrilets S. 2009. Pattern, process and geographic modes of speciation. Journal of Evolutionary Biology 22(11): 2332-2341. Link
Gavrilets S, Losos JB. 2009. Adaptive radiation: Contrasting theory with data. Science 323(5915): 732-737. Link
Gavrilets S, Vose A. 2009. Dynamic patterns of adaptive radiation: Evolution of mating preferences. In: Butlin RK, Bridle J, Schluter D (eds.), Speciation and Patterns of Diversity, Cambridge University Press, pp. 102-126. Link
Handa N, Ichige A, Kobayashi I. 2009. Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex. Microbiology 155(7): 2320-2332. Link
Kobayashi I, Handa N. 2009. DNA double-strand breaks and their consequences in bacteria. Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, ISBN 13:9780470015902. Link
Reichard JD, Kunz TH. 2009. White-nose syndrome inflicts lasting injuries to the wings of little brown myotis (Myotis lucifugus). Acta Chiropterologica 11(2): 457-464. Link
Rice WR, Gavrilets S, Friberg U. 2009. Sexually antagonistic chromosomal cuckoos. Biology Letters 5(5): 686-688. Link
Sadedin S, Hollander J, Panova M, Johannesson K, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 3: Ecotype formation in a Swedish snail. Molecular Ecology 18(19): 4006-4023. Link
Travis CB, Gross LJ, Johnson BA. 2009. Tracking the gender pay gap: A case study. Psychology of Women Quarterly 33(4): 410-418. Link
Yahara K, Fukuyo M, Sasaki A, Kobayashi I. 2009. Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer. Proceedings of the National Academy of Sciences 106(44): 18861-18866. Link

   2017    2016    2015    2014    2013    2012    2011    2010    2009    2008

Publications 2008 Online
Gavrilets S, Duenez-Guzman EA, Vose MD. 2008. Dynamics of alliance formation and the egalitarian revolution. PLoS ONE 3(10): e3293. Link

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