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Models, Data, Software, Websites, & Databases

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2016 Link
Bapst DW, Wright AM, Matzke NJ, Lloyd GT. 2016. Data from: Topology, divergence dates, and macroevolutionary inferences vary between different tip-dating approaches applied to fossil theropods (Dinosauria). Dryad Digital Repository. Link
Chaudhary et al. 2016. Data from: MycoDB, a global database of plant response to mycorrhizal fungi. Dryad Digital Repository. Link
Gerkin RC. 2016. NeuronUnit: A package for data-driven validation of neuron and ion channel models using SciUnit.
Hamerlinck G, Lemoine NP, Hood GR, Abbott KC, Forbes AA. 2016. Data from: Meek mothers with powerful daughters: effects of novel host environments and small trait differences on parasitoid competition. Dryad Digital Repository. Link
Kawano SM, Economy DR, Kennedy MS, Dean D, Blob RW. 2016. Data: Comparative limb bone loading in the humerus and femur of the tiger salamander, Ambystoma tigrinum: testing the "mixed-chain" hypothesis for skeletal safety factors. Dryad Digital Repository. Link
Matzke NJ, Wright A. 2016. Data from: Inferring node dates from tip dates in fossil Canidae: the importance of tree priors. Dryad Digital Repository. Link

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2015 Link
Egizi A, Fefferman NH, Fonseca DM. 2015. Data: Evidence that implicit assumptions of ‘no evolution’ of disease vectors in changing environments can be violated on a rapid timescale. Dryad Digital Repository.
Farrior CE, Rodriguez-Iturbe I, Dybzinski R, Levin SA, Pacala SW. 2015. Data: Decreased water limitation under elevated CO2 amplifies potential for forest carbon sinks. Link
Hoban S, Ghirotto S, Vilaca S, Benazzo A. 2015. Data from: Using ABC and microsatellite data to detect multiple introductions of invasive species from a single source. Dryad Digital Repository. Link
Iwasaki WM, Kawata M, Gavrilets S. 2015. Simulation Program: Evolutionary Diversification in Anolis Lizards. Link
Kingsolver et al. 2015. Data from: Genetic variation, simplicity and evolutionary constraints for function-valued traits. Dryad Digital Repository. Link
Smaldino P. 2015. The diffusion of products in a multigroup environment: An agent-based model in Java.
Utsey K, Estes S, Kalobwe E, Zhao X, Finotti H. 2015. Wolfram Demonstration: Synthetic Fetal Electrocardiogram.

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2014 Link
Ane C. 2014. R package WGDgc and SPIMAPWGD. Link
Ane C. 2014. iBPP: Bayesian species delimitation integrating genes and traits. Link
Bravo R, Axelrod DE. 2014. VirtualCryptModel020413G: Agent-Based computational model of the colon crypt: Development of a virtual crypt for in-silico experiments. NetLogo Community Models Repository. Link
Dhurandhar et al. 2014. Simple factor calculator based on compensation estimates from the paper published. Link
Ellison LE, Everette AL. 2014. Bat Population Database: An online web application for entering and managing data for NABat.
Friedenberg NA, Shoemaker K, Root B. 2014. RAMAS IRM Version 2.0: Software for risk-based durability assessment. Applied Biomathematics, Setauket, New York.
Hoban et al. 2014. Data from: Comparative evaluation of potential indicators and temporal sampling protocols for monitoring genetic erosion. Dryad Digital Repository. Link
Kershenbaum A, Smuts B, Owens J, Koler-Matznick J, Comiskey J. 2014 March 15. HowlCoder crowdsourcing site.
Velazquez J, Garrahan JP, Eichhorn MP. 2014. Data: IBM Ecology Simulator. Link

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2013 Link
Boone J, Slater M. 2013. A generalized population monitoring program to inform the management of free-roaming cats.
Gurarie D. 2013. Mathematica code for "Optimal control of dynamical systems (ODE and PDE)".
Gurarie D. 2013. Reed-Frost SEIR Model (CDF tool for simulating SEIR systems with variable parameters). Wolfram Demonstrations Project. Link
Kershenbaum A, Roch M. 2013 December 9. IPRiT software library. Link
Miller P, ACC&D Cat Population Model Working Group. 2013 March. Completed simulation model of free-ranging cat populations and multiple management scenarios, and accompanying report. ACC&D and the ASPCA (submitted).
Schmidt D, Chen WC, Ostrouchov G, Patel P, R Core Team. 2013. pbdDMAT: An R package update. Link
Schmidt D, Chen WC, Ostrouchov G, Patel P. 2013. pbdBASE: An R package update. Link
Shah P, Fitzpatrick BM, Fordyce JA. 2013 May 3. iteRates: Parametric rate comparison (version 3.1). Link
Tank DC, Eastman JM, Beaulieu JM, Smith SA. 2013. Phylogenetic resources. Data from: Three keys to the radiation of angiosperms into freezing environments. Nature. Dryad Digital. Link
Tank et al. 2013. Taxonomic lookup table containing clade-level mappings for 15.363 genera of Spermatophyta. Data from: Three keys to the radiation of angiosperms into freezing environments. Nature. Dryad Digital. Link
Zanne et al. 2013 December 22. Tree, data, and source code: Three keys to the radiation of angiosperms into freezing environments. Link

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2012 Link
Berry et al. 2012. Online Tutorial: Python for Biologists. Link
Turchin P, Storrs CT. 2012. Software: Historical Database of Sociocultural Evolution (SESHAT).
Swat M, Belmonte J, Hmeljak M, Heiland R, Sauro H et al.. 2012. www.compucell3d.org.

   2016    2015    2014    2013    2012    2011    2010    2009

Models, Data, Software, Websites, & Databases 2010 Link
Liu L. In preparation (2010). Software: Bayesian Estimation of Gene Family Evolution (BEGFE).
Worden L, Schreiber S, Bolnick D. 2010. WorkingWiki research and computation extension for MediaWiki. Developed at McMaster University. Link

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