| Publications |
Year |
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Agusto FB, Gumel AB, Lenhart S, Odoi A. 2011. Mathematical analysis of the transmission dynamics of bovine tuberculosis model. Journal of Mathematical Methods in Applied Sciences 34:1873-1887.
[Online]
| 2011
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Araújo MS, Bolnick DI, Layman CA. 2011. The ecological causes of individual specialisation. Ecology Letters, 14(9): 948-958.
[online]
| 2011
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Beckage B, Gross L, Kauffman S. 2011. The limits to prediction in
ecological systems. Ecosphere: 2(11):125. doi: 10.1890/ES11-00211.1
[online]
| 2011
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Akcay E. 2011. Incentives in the family II: Behavioral dynamics and the evolution of non-costly signaling. Journal of Theoretical Biology, 294:9-18.
[online]
| 2011
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Akçay E, Simms E. 2011. Negotiation, sanctions and context dependency in the legume-rhizobium mutualism. The American Naturalist. Published
[online]
June 2, 2011.
| 2011
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Bolnick DI, Amarasekare P, Araujo M, Bürger R, Jiang Y, Levine J, Novak M, Rudolf V, Schreiber S, Urban M, Vasseur D. 2011. Why intraspecific trait variation matters in ecology. Trends In Ecology and Evolution 26:183-192. [Online]
| 2011
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Ceddia MG, Bartlett M, DeLucia C, Perrings C. 2011. On the regulation of spatial externalities: coexistence between GM and conventional crops in the EU and the 'newcomer principle.' The Australian Journal of Agricultural and Resource Economics,
55, 126-143. [Online]
| 2011
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Cooper IA, Gilman RT, Boughman JW. 2011. Sexual dimorphism and speciation on two ecological coins: Patterns from nature and theoretical predictions. Evolution.
[Online]
| 2011
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Crawley CE, Bishop PR. 2011. Just can't get you out of my head:
Communicating science through music. Submitted.
[Full Survey Results]
| 2011
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Dorazio RM, Gotelli NJ, Ellison AM. 2011. Modern methods of estimating biodiversity from presence-absence surveys. In Biodiversity / Book 4, O. Grillo (ed.), InTech, ISBN 978-953-307-1427-1 (in press).
| 2011
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Fenichel EP, Castillo-Chavez C, Ceddia MG, Chowell G, Gonzalez-Parra PA, Hickling GJ, Holloway G, Horan R, Morin B, Perrings C, Springborn M, Velazquez L, Villalobos, C. 2011. Adaptive human behavior in epidemiological models. Proceedings of the National Academy of Sciences.
[Online]
| 2011
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Gilman RT, Behm JE. 2011. Hybridization, species collapse, and species reemergence after disturbance to premating mechanisms of reproductive isolation. Evolution.
[Online]
| 2011
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Gilman RT, Fabina NS, Abbott KC, and Rafferty NE. 2011. Evolution of
plant–pollinator mutualisms in response to climate change. Evolutionary
Applications. Early View
[online] Sept. 7, 2011.
| 2011
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Gomero B. 2011. Evaluating modeling approaches that forecast infectious disease dynamics and predict disease risks. Graduate Research Report for the National Center for Medical Intelligence/National Institute for Mathematical and Biological Synthesis Infectious Disease Modeling Workshop, Jan. 23-25. [PDF]
| 2011
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Gonzalez-Parra PA, Lee S, Velazquez L, Castillo-Chavez C. 2011. A note on the use of optimal control on a discrete time model of influenza dynamics. Mathematical Biosciences and Engineering 8:183-197.
[Online]
| 2011
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Horan RD, Fenichel EP, Melstrom RT. 2011. Wildlife disease bioeconomics. International Review of Environmental and Resource Economics 5:23-61.
[Online]
| 2011
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Horan RD, Melstrom RT. 2011. No sympathy for the devil. Journal of Environmental Economics and Management, published online May 2011. [Online]
| 2011
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Krakauer DC, Page K, Flack J. 2011. The immuno-dynamics of conflict intervention in social systems. PLoS ONE 6(8): e22709. doi:10.1371/journal.pone.0022709
[Online]
| 2011
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Lennox GD, Armsworth PR. 2011. The suitability of short or long conservation contracts under ecological and socio-economic uncertainty. Ecological Modelling 222:2856-2866.
[Online]
| 2011
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Mao Y. 2011. Dynamical basis for drug resistance of HIV-1 protease. BMC Structural Biology.
Published [online] 8 July 2011.
| 2011
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Mao, Y. 2011. Dynamics studies of luciferase using elastic network model: how the sequence distribution of luciferase determines its color. Protein Engineering & Design Selection 2011, 24:341-349.
[Online]
| 2011
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Mesterton-Gibbons M, Gavrilets S, Gravner J, Akçay E. 2011. Models of coalition or alliance formation. J. Theor. Biol. 274:187-204.
[Online]
| 2011
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Parshad RD, Agusto FB. 2011. Global dynamics of a PDE model for Aedes aegypti mosquitoe incorporating female sexual preference. Dynamics of PDE, 8(4):311-343.
[Online]
| 2011
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Riechert SE, Leander RN, Lenhart SM. 2011. A role-playing exercise that demonstrates the process of evolution by natural selection: Caching squirrels in a world of pilferers. The American Biology Teacher 73:208-212.
[Online]
| 2011
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Schreiber S, Burger R, Bolnick D. 2011. The community effects of phenotypic and genetic variation within a predator population. Ecology. In press. [Online]
| 2011
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Sekercioglu CH, Anderson S, Akcay E, Bilgin R, Can E, Semiz G, Tavsanoglu C, Soyumert A, Yokes MB, Ipekdal K, Saglam I, Yucel M, Dalfes N. 2011. Turkey's globally important biodiversity in crisis. Biological Conservation, 144:2752-2769.
[online]
| 2011
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Shah P, Gilchrist MA. 2011. Explaining complex codon usage patterns with selection for translational efficiency, mutation bias, and genetic drift. Proceedings of the National Academy of Sciences. [Online]
| 2011
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Thibert-Plante X, Hendry AP. 2011. Factors influencing progress toward sympatric speciation. Journal of Evolutionary Biology.
[Online edition] 24 June 2011.
| 2011
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Vasseur DA, Amarasekare P, Rudolf VHW, Levine JM. 2011. Eco-evolutionary dynamics enable coexistence via neighbor-dependent selection. The American Naturalist 178:5. Published online September 30, 2011. DOI: 10.1086/662161
[online]
| 2011
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Abu-Khzam FN, Fernau H, Langston MA, Lee-Cultura S, Stege U. 2010. A fixed-parameter algorithm for string-to-string correction, Proc. of Computing: the Australasian Theory Symposium, Brisbane, Australia.
| 2010
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Agusto FB, Ogunye OR. 2010. Avian influenza optimal seasonal vaccination therapy. ANZIAM Journal. 51:394–405.
[Online]
| 2010
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Agusto FB, Okosun KO. 2010. Optimal seasonal biocontrol for Eichhornia Crassipes. International Journal of Biomathematics. 3(3):1-15.
[Online]
| 2010
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Akçay E, Roughgarden J. The evolution of payoff matrices: Providing incentives to cooperate. Proceedings of the Royal Society B. Published online December 8, 2010.
[Online]
| 2010
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Bodine EN. 2010. Dissertation: Optimal Control of Species Conservation Strategies. University of Tennessee, Knoxville.
| 2010
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Bodine E, Lenhart S, Gross L. 2010. Mathematics for the Life Sciences. In progress.
| 2010
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Brock WA, Kinzig AP, Perrings C. 2010. Modeling the economics of biodiversity and environmental heterogeneity. Environmental and Resource Economics, 46, 43-58.
[Online]
[PDF]
| 2010
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Collins C, Fister KR, Williams M. 2010. Optimal control of a cancer cell model with delay. Mathematical Modeling of Natural Phenomena 5:63-75.
[Online]
| 2010
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Ding W, Lenhart S. 2010. Introduction to optimal control for discrete time models with an application to disease modeling. In Modeling Paradigms and Analysis of Disease Transmission Models, DIMACS AMS Volume. In press.
| 2010
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Dorazio RM, Connor EF. December 2010. Estimating patterns of co-occurrence in species abundances using point counts and foraging guilds. XXVth International Biometric Conference, Florianopolis, Brazil.
| 2010
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Duncan SI, Bishop P, Lenhart S. 2010. Preparing the "New" Biologist of the Future: Student Research at the Interface of Mathematics and Biology. Life Sciences Education 9(3):311-315.
[Online]
| 2010
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Fenichel EP, Horan RD, Hickling GJ. 2010. Bioeconomic management of invasive vector-borne diseases. Biological Invasions. Published online March 10, 2010.
[Online]
| 2010
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Fenichel EP, Horan RD, Hickling GJ. 2010. Management of infectious wildlife diseases: Bridging conventional and bioeconomic approaches. Ecological Applications 20:903-914. [Online]
| 2010
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Fister R, Buford G, Norris B, Lenhart S, Zhong P, Schaefer E, Gaff H. November 2010. Optimal control of cholera models. American Mathematical Society Southeastern Section meeting, Richmond, VA.
| 2010
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Frick WF, Pollock JF, Hicks AC, Langwig KE, Reynolds DS, Turner GG, Butchkoski CM, Kunz TH. 2010. An emerging disease causes regional population collapse of a common north american bat species. Science 329(5992):679-82.
| 2010
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Frick WF, Reynolds DS, Kunz TH. 2010. Influence of climate and reproductive timing on demography of little brown myotis (Myotis lucifugus). Journal of Animal Ecology 79:128-136.
[Online]
| 2010
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Fujitani Y, Kawai J, Kobayashi I. 2010. Random-walk mechanism in the genetic recombination. In Advances in Computational Biology (series: Advances in Experimental Medicine and Biology) 680:275-82.
[Online]
| 2010
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Furuta Y, Abe K, Kobayashi I. 2010. Genome comparison and context analysis reveals putative mobile forms of restriction-modification systems and related rearrangements. Nucleic Acids Res. 38:2428-2443.
[Online]
| 2010
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Giraud T, Gladieux P, Gavrilets S. 2010. Linking the emergence of fungal plant diseases with ecological speciation. Trends in Ecology and Evolution 25(7):387-395.
[Online]
| 2010
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Godsoe W. 2010. I can't define the niche but I know it when I see it: a formal link between statistical theory and the ecological niche. Oikos 119:53-60.
[Online]
| 2010
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Godsoe W. 2010. Regional Variation Exaggerates Ecological Divergence in Niche Models. Systematic Biology 59:298-306.
[Online]
| 2010
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Godsoe W, Yoder JB, Smith CI, Drummond CS, Pellmyr O. 2010. Absence of population-level-phenotype matching in an obligate pollination mutualism. Journal of Evolutionary Biology 23:2739-2746. [Online]
| 2010
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Gonzalez-Parra P, Velazquez L, Villalobos MC, Castillo-Chavez C. 2010. Optimal control applied to a discrete influenza model. Proceedings of the XXXVI International ORAHS Conference.
| 2010
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Gotelli NJ, Dorazio RM, Ellison AM, Grossman GD. 2010. Detecting temporal trends in species assemblages with bootstrapping procedures and hierarchical models. Philosophical Transactions of the Royal Society of London, Series B 365:3621-3631.
[Online]
| 2010
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Hallam TG, McCracken GF. Management of the panzootic white-nose syndrome through culling of bats. Conservation Biology 25:189-194
[Online]
| 2010
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Horan RD, Fenichel EP, Wolf CA, Gramig BM. 2010. Managing infectious animal disease systems. Annual Review of Resource Economics 2:101-124.
[Online]
| 2010
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Khan F, Furuta Y, Kawai M, Kaminska K, Ishikawa K, Bujnicki J, Kobayashi I. 2010. A putative mobile genetic element carrying a novel Type IIF restriction-modification system (PluTI). Nucleic Acids Res. 38:3019-3030.
[Online]
| 2010
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Krivan V. Evolutionary stability of optimal foraging: Partial preferences in the diet and patch models. Journal of Theoretical Ecology 267:486-494. [Online]
| 2010
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Lennox GD, Dallimer M, Armsworth PR. 2010. Landowners' ability to leverage in negotiations over habitat conservation. Theoretical Ecology, published online 18 November 2010.
[Online]
| 2010
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Meyer K, Kirkpatrick M. 2010. Better estimates of genetic covariance matrices by "bending" using penalized maximum likelihood. Genetics 109:1097-1110.
[Online]
| 2010
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Miller NR, Lenhart S. 2010. Introduction to optimal control with an application in disease modeling. In Modeling Paradigms and Analysis of Disease Transmission Models, DIMACS AMS Volume. In press.
| 2010
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Miller NR, Schaefer E, Gaff H, Fister KR, Lenhart S. March 2010. Modeling optimal intervention strategies for cholera. Bulletin of Mathematical Biology 72:2004-18.
[Online]
| 2010
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Perrings C. 2010. The exotic effects of capital accumulation. Proceedings of the National Academy of Sciences, 107, 12063-12064. [Online]
| 2010
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Perrings C, Burgiel S, Lonsdale WM, Mooney H, Williamson M. 2010. International cooperation in the solution to trade-related invasive species risks. Annals of the New York Academy of Sciences, 1195, 198-212. [PDF]
| 2010
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Riechert SE, Post BK. 2010. From skeletons to bridges and other STEM enrichment exercises for high school biology. American Biology Teacher 72:20-22.
[Online]
| 2010
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Roughgarden J, Akçay E. 2010. Do we need a sexual selection 2.0? Animal Behaviour 79(3):e1-e4.
[Online]
| 2010
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Roughgarden J, Akçay E. 2010. Final response: sexual selection needs an alternative. Animal Behaviour 79(3):e18-e23.
[Online]
| 2010
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Shah P, Gilchrist MA. 2010. Effect of correlated tRNAs on translation errors and the evolution of codon usage bias. PLoS Genetics 6:e1001128. [Online]
| 2010
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Shah P, Gilchrist MA. 2010. Is thermosensing property of RNA thermometers unique? PLoS ONE 5: e11308. [Online]
| 2010
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Slocum MG, Beckage B, Platt WJ, Orzell SL, Taylor W. 2010. Effect of climate on wildfire size: A cross-scale analysis. Ecosystems 13: 828–840.
[Online]
| 2010
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Smith RJ, Okano JT, Kahn JS, Bodine EN, Blower S. 2010. Evolutionary dynamics of complex networks of HIV drug-resistant strains: The case of San Francisco. Science 327:697-701.
[Online]
| 2010
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Tang G, Beckage B. 2010. Projecting the distribution of forests in New England in response to climate change. Diversity and Distributions 16:144-158.
[Online]
| 2010
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Thibert-Plante X, Hendry AP. 2010. The consequences of phenotypic plasticity for ecological speciation. Journal of Evolutionary Biology. 24:326-342.
[Online]
| 2010
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Thibert-Plante X, Hendry AP. 2010. When can ecological speciation be detected with neutral loci? Molecular Ecology 19:2301-2314. [Online]
| 2010
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Ubeda F, Gardner F. 2010. A model for genomic imprinting in the social brain: juveniles. Evolution 64:2587-2600. [Online]
| 2010
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Yoder JB et. al. 2010. Ecological opportunity and the origin of adaptive radiations. Journal of Evolutionary Biology. Published online Jun 17, 2010.
[Online]
| 2010
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Wise SM, 2010. Unconditionally stable finite difference, nonlinear multigrid simulation of the Cahn-Hilliard-Hele-Shaw system of equations, J. Sci. Comput. 44:38-60.
[Online]
| 2010
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Akçay E, Van Cleve J, Feldman MW, Roughgarden J. 2009. A theory for the evolution of other-regard integrating proximate and ultimate perspectives. PNAS 106:19061-19066.
[Online]
| 2009
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Araújo MS, Bolnick DI, Martinelli LA, Giaretta AA, Dos Reis SF. 2009. Individual-level diet variation in four species of Brazilian frogs. Journal of Animal Ecology 78:848-856.
[Online]
| 2009
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Beckage B, Platt WJ, Gross LJ. 2009. Vegetation, fire, and feedbacks: A disturbance‐mediated model of savannas. The American Naturalist 174:805-818.
[Online]
| 2009
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Duenez-Guzman EA, Mavárez J, Vose MD, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 4. Butterflies in a jungle. Evolution 63:2611-2626. [Online]
| 2009
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Duenez-Guzman EA, Vose AD, Vose MD, Gavrilets S. 2009. Simulating population genetics on the XT5. Proceeding of the Compute the Future Cray Users Group conference in Atlanta.
| 2009
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Fitzpatrick BM, Fordyce JA, and Gavrilets S. 2009. Pattern, process, and geographic modes of speciation. Journal of Evol. Biol. 22:2342-2347. [Online]
| 2009
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Gavrilets S, Losos JB. 2009. Adaptive radiation: Contrasting theory with data. Science 323:732-737.
[Online]
| 2009
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Gavrilets S, Vose A. 2009. Dynamic patterns of adaptive radiation: evolution of mating preferences. In Butlin RK, Bridle J, Schluter D (eds) Speciation and Patterns of Diversity, Cambridge University Press, pp. 102-126.
| 2009
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Handa N, Ichige A, Kobayashi I. 2009. Contribution of RecFOR machinery of homologous recombination to cell survival after loss of a restriction-modification gene complex. Microbiology 155:2320-2332.
[Online]
| 2009
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Kobayashi I, Handa N. 2009. DNA double-strand breaks and their consequences in bacteria. In Encyclopedia of Life Sciences, John Wiley & Sons, Ltd, Chichester.
| 2009
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Post BK, Riechert SE. 2009. Bridging the gap: Biology and engineering in the high school curriculum. Proceedings Of ASEE SE Conference, Marietta, Georgia.
| 2009
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Reichard JD, Kunz TH. 2009. White-Nose Syndrome inflicts lasting injuries to the wings of little brown myotis (Myotis lucifugus). Acta Chiropterologica 11:457-464.
[Online]
| 2009
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Rice WR, Gavrilets S, Friberg U. 2009. Sexually antagonistic chromosomal cuckoos. Biology Letters 5:686-688.
| 2009
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Sadedin S, Hollander J, Panova M, Johannesson K, Gavrilets S. 2009. Case studies and mathematical models of ecological speciation. 3. Ecotype formation in a Swedish snail. Molecular Ecology 18:4006-4023.
| 2009
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Travis CB, Gross LJ, Johnson BA. 2009. Tracking the gender pay gap: A case study. Psychology of Women Quarterly 33:410-418.
[Online]
| 2009
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Yahara K, Fukuyo M, Sasaki A, Kobayashi I. 2009. Evolutionary maintenance of selfish homing endonuclease genes in the absence of horizontal transfer. PNAS 106:18861-18866.
[Online]
| 2009
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